Quercus lobata (valley oak): 115980305
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Entry
115980305 CDS
T07350
Name
(RefSeq) syndetin-like isoform X1
KO
K23288
syndetin
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
qlo04131
]
115980305
Membrane trafficking [BR:
qlo04131
]
Protein recycling
Others
EARP complex
115980305
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
115980305
NCBI-ProteinID:
XP_030958430
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All DBs
Position
1:14621829..14656211
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AA seq
1137 aa
AA seq
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MQPNLFPFGTVLGNPYLFNGDLSEGLDSSRIFFLVPFLLFQGGGMDLSKVGEKILSSVRS
ARSLGLLPSTSDRPEVPPRAAAAAAVAHALAGLPLHQRFNLSSSSEELRSIYGIGTRSQG
QVLELEEDFYEEDFDPVRHILEHIPSDENDLTFFEKQAALRLAQLDIVAERLSHHVMEHH
EVMVKGMNLVRELEKDLKIANVICMNGRRHLNSSVNEVSRDLIVNSNSKKKQALLDLLPI
LNEFCHALNMQAALESLVEEGDYCKAFQVLSEYLQLLDSFSELSAIQEMSRGVEVWLEKT
LQKLDSLLLGVCQEFKQEGYITVVDAYALIGDVSGLAEKIQSFFMQEVLSETQTVLKNIV
QEDQEVLLQNTRLTYSDLCLRIPESMFRQCLLTTLAVLFGLMCSYYEIMGFQLDNKDSAD
QTSSMKQKEKDILWSSGEVQQIDSDTKNSSNCQGVNSSLSESVDRKPGSSMEESTTNGCL
VETNRTTQLSSLDSQDIVDETRRDDSTASSSGSPQYQLRKDATEFVSQMLQRGRKNLWQL
TTSRVSVLLSSTAVCSTSIHQFLKNYEDLNVFILAGEAFCGVEAVEFRQKLKGVCENYFA
AFHRQNIYALKMVLEKENWLKLPPDTVQVISFAGLVGDGAPLIVPSVGKSSNARVRSSDK
SASLVDANAKKSGFLYWLKSGNPFLLKVTHNSKEGRNSSLLNGAVCSDFDGNNSENSHDD
KFSPQKNDVNHTNGPNSISEDENEDLLADFIDEDSQLPSRVSKPNVSRSDPAHWKDVEVT
AQTGSSVCLLRSMDKYARLMQKLEIVDIEFFKGICQLFGIFFYFLFETFVQQNPSSSGKS
FTESLNYRLKTALSRITQDCDQWIKPPSSSPTSLSTSFMHADISPTSPPSTKFGHLPGTS
FGLKERCAGADTLFLVARILHKSKAHLQVMLLQNNATIVEDFYVHVVDAVPDLVDQIHRT
TVKLLLHINGYVDRVANAKWEVKELGLEHNGYVDLLLGEFKHFKTRLAHGGLRKEVQDLL
LEYGLEIVAETLIEGLSRVKRCTDEGRALMSLDLQVSFLACQLTRICALQHFLYVKPKLQ
MVETFIKAYYLPETEYVYWARTHPEYTKSQIVGLVNLVATMKGWKRKNRLDVLEKIE
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgaatctgttcccgttcggcactgttttgggaaatccgtacttgttcaatggc
gatttgagcgaagggctcgatagctctaggattttcttcttggtcccgtttttgttgttc
caaggaggcggaatggatttgtctaaggtcggcgagaagattctcagttccgttaggtcc
gccagatcgcttggacttcttccttctacttctgatcgccccgaggttcctcctcgagct
gcagcagcagcagctgttgctcatgctcttgcagggctgcctctgcatcagaggtttaat
ttgtcatcaagttctgaagagctgagatcaatatatggaattggaaccagatctcaaggt
caagttctagagttagaggaagacttctatgaagaggacttcgatccagttaggcatatt
ttagaacatattccatctgatgaaaatgacctgacattttttgagaaacaggcagctctt
agattagcacaactggatatagtagcagaacgtttatcccaccatgttatggagcatcat
gaagtaatggtgaaggggatgaatctagtcagggaattggagaaagacttaaagattgca
aatgtcatctgcatgaatggaagaaggcacctgaactcatcagtgaatgaggtttcaagg
gatctcattgtaaattctaattccaaaaagaaacaagctcttctggacttgcttccaatt
ttaaatgagttttgtcatgcactaaacatgcaagcagcacttgaatcacttgttgaggaa
ggagattattgcaaggcattccaagttctatccgagtatttgcagctcttagatagtttt
tcagagctgtcggcaatacaagagatgagccgtggcgtagaggtttggcttgaaaaaacg
cttcaaaagctggattcccttttactaggagtttgccaggagttcaaacaagagggctat
ataactgtagttgatgcttatgcattaattggggatgtctctggtcttgctgaaaagata
caaagcttctttatgcaggaggttctttcagaaacacagactgtgttgaagaatatagtg
caagaggatcaggaagtactattgcaaaatactagacttacctacagtgatctatgcctt
cggatacctgaatctatgtttaggcagtgtttgttaacaacactagctgtcctatttggg
ttgatgtgttcttattatgaaattatgggctttcagctggacaataaggattcagcagac
caaacttcaagtatgaaacagaaggaaaaagatatcctttggagttctggagaggttcaa
caaattgattcagatactaaaaattcttccaactgccaaggagtcaacagctctctctct
gaatctgtagacagaaagcctggttcatctatggaggaatctacaaccaacggctgtttg
gttgagactaatagaactactcaattgtctagtttggattctcaagatatagttgatgag
actagaagggatgacagtacagcatctagtagtggatccccacagtatcaactgcggaaa
gatgctacagaatttgtttcacagatgcttcaaagaggtcggaagaatctttggcaactc
acaactagtcgtgtatctgtcttgctttcttctactgctgtttgttcaacaagcatccac
caatttttgaaaaattatgaagatctgaatgtcttcatcttggctggggaagccttctgt
ggtgttgaagcagttgagttcaggcagaagttaaagggcgtttgtgaaaattattttgca
gcatttcatcggcaaaatatttatgcactgaaaatggtgttggaaaaggagaattggctg
aaattgccaccagatacagtccaagtgattagttttgcggggcttgtaggtgatggagca
cccctaattgttccatctgttggaaaatcaagtaatgccagggtgcgttcttctgataaa
tcagccagcttagttgatgccaatgcaaagaagagtggatttttatattggcttaaaagt
ggaaatccctttttgctaaaagtaacacataattccaaagaaggtcgcaattcttcccta
cttaatggggctgtctgcagtgattttgatgggaataatagtgaaaattctcatgatgat
aagttctctccccaaaagaatgatgtaaatcatacaaatggccctaattctatatctgaa
gatgaaaatgaagatcttcttgcagactttattgatgaggacagtcaacttcctagtcga
gtttctaaacccaatgtttcaagaagtgaccctgcccattggaaagatgtagaggttaca
gctcaaactggatcctctgtttgtcttctaaggtcaatggataaatatgcaaggcttatg
cagaaattagaaatagtcgatatcgagtttttcaaggggatatgccagttgtttggcatt
tttttctattttttatttgaaacatttgttcagcaaaaccccagttcaagtggaaagagc
ttcactgagtctcttaattatcggctaaagacggccttgtccagaataacacaagattgt
gaccagtggataaaacccccatcctcttcacccacatcgttgagcacatcatttatgcat
gcagatatttcacctaccagtcctcccagtacaaaatttggtcacctcccaggaacaagt
tttggtctcaaggaaagatgtgcaggtgctgatactttgtttcttgttgcccgaatactg
cataaatctaaagctcatctccaagtgatgcttctgcaaaataatgcaactatagttgaa
gatttttatgtgcatgtggtggatgctgtgccggatcttgtagaccaaattcataggaca
actgtgaaacttcttcttcacattaatgggtatgttgatcgggttgccaatgctaaatgg
gaagtgaaagagcttggactagagcataatgggtacgttgatttgttgttgggagaattt
aagcactttaaaacaaggcttgctcacgggggactacgcaaagaggttcaagacctcctc
ttagaatacggacttgaaattgttgcggaaactcttattgaaggtctatcacgagtgaaa
aggtgtactgatgagggacgagctctgatgtcgttggatcttcaggtttcttttttagcg
tgtcaactgacaagaatctgcgcattgcaacatttcctttatgtgaagcctaaattacag
atggtcgaaacctttattaaggcatactacctacctgaaactgaatatgtatactgggca
cggactcaccctgaatacactaaaagtcaaattgttgggctagtcaaccttgttgcgacg
atgaaaggttggaagagaaaaaacaggttggatgtactggaaaagatagagtga
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