Quercus lobata (valley oak): 115980949
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Entry
115980949 CDS
T07350
Name
(RefSeq) protein CHROMATIN REMODELING 20
KO
K10779
transcriptional regulator ATRX
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
qlo03000
]
115980949
03036 Chromosome and associated proteins [BR:
qlo03036
]
115980949
Transcription factors [BR:
qlo03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
115980949
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
115980949
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
ADD_ATRX
AAA_34
Motif
Other DBs
NCBI-GeneID:
115980949
NCBI-ProteinID:
XP_030959001
LinkDB
All DBs
Position
3:29577678..29625838
Genome browser
AA seq
1507 aa
AA seq
DB search
MEEKLEEADDVESTSSDSFIDGLEDGSEDDGPSTSGQDEGMRLEDPLTEEEIEELIAEFL
EVESKAAEAQEALEKDSLANVESEVREELAQTLQGDDLETAVADEMSTLTEEWETVLDEL
ETESAHLLEQLDGAGIELPSLYKWIESQAPNGCSTEAWKKRVHWVGSQTTSEVTESVVDA
ENFLQIHRPVRRRHGKLLEEGASGFLQKKLAVDGSKEAVTENPEVDWSSLNKIFSDHVSV
DDTTFGSKNWASVYLASTPQQAAVMGLKFPGVNEVEEIDDIDGSFNDPFVAAAIANEKEL
DLSEEQKKNFRKVKEEDDANVDLKLQIHLKRRRHRQRRKQEVSQKFVSAVDQVLESNLDK
SSSWVDNSNPVSNEKNCEDGNGLPNNHNEVACQNVQTDMLDASETCNDLDNKGPMNNAPS
LSEPALPDHTGPRGSKRPNEIEELKVDNKKSRTVIIDSDDETHFVKENSHPNATSLDPDS
NSKENIGEPGADSIPLQSQNEKFDCTACSKLAVEVHRHPLLKVIICRDCKSLMEYKMQMK
DSDCAECYCGWCGGGSDLVSCKKCRTLFCTTCIKRNIGAECLSEIQTLGWKCCCCCPSLL
QRLSLQLEKAMGSGTLIVSSSDSDSDNSDSDSDSDSDVNVAYSSKRRNKKKIRRILDDAE
LGEETRRKIAIEKERQERLKSLQVQFSAKSKIMSSAGSNGNLSEGASVEVLGDASTGYVV
NVVREKGEEAVRIPPSISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGL
GKTFQVITFLYTAMRSIDLGLKTALIVLPVNVLHNWRHEFMKWRPSELKPLRVFMLEDVS
RERRAELFAKWRAKGGVFLIGYTAFRNLSLGKNVKDRHMAREICYALQDGPDILVCDEAH
MIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQN
PIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMNVVKNDLPPKTVFVIAVKLSPL
QRKLYKRFLDVHGFTKDKVSNEKIIKRSFFAGYQALAQIWNHPGILQLTKEDKDYVRRTE
DAVENFLVDDSSSDENIDYNMDIGDKPKSANDYLQGKNGAGFLPKDWWNDLLHGNNFKEL
DYSGKMVLLLDILTMSSGVGDKVLVFSQSIPTLDLIELYLSRLPRSGKRGKFWKKGKDWY
RLDGRTESSERQKLVERFNEPTNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYD
LQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKESLAARVVDRQQVGRTISKEEM
LHLFEFGDDENLDTLADLGLENGHTSNNNMTGQVGNSQTMPPQGSCSSDKIMESLLGKHY
PRWISNYHEHETLLQENEEEKLSKEEQDMAWEVYQRTLEWEEVQRVPLDESASERKPDAS
SMPPPAPETSLSQSKMRNRLVQRKCTNLSHLLTLRSQGTKVGCTTVCGECAQEISWEDLN
RDGKTAR
NT seq
4524 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagctagaggaagctgatgatgttgagagcacttctagcgattcttttatt
gatggcctagaagatggctcagaagatgatggaccgtcaacatctggacaagatgagggg
atgcgtcttgaggatcctttgactgaggaagaaatagaagagctgattgctgagttcttg
gaagttgagagtaaggctgcagaggctcaagaagcacttgaaaaggattcccttgccaat
gtggagagtgaagttagagaggagttggcacagactctccaaggggatgatttggaaacg
gctgttgcagatgaaatgagtacgcttacagaagagtgggaaactgtgcttgatgagctt
gagaccgagagtgctcatttgttggaacaacttgatggtgctggtattgagctaccaagc
ctttataagtggattgaaagtcaggctcctaatggttgcagcactgaagcttggaaaaag
agggtgcactgggttgggtctcagacaaccagtgaagttactgagtctgtagttgatgct
gagaactttcttcaaatccacaggcctgtaagaagacgacatggtaaactattggaagag
ggtgcaagcggatttctgcagaaaaaacttgctgttgatggaagcaaggaggctgtaaca
gaaaatccagaggttgattggtcctctctcaacaaaatattttctgatcatgtgtcagtt
gatgacactacatttggcagcaagaattgggcctctgtatacttagccagcactccacag
caagcagcagtgatgggacttaaatttcctggagtcaatgaggtggaggagattgatgac
attgatggaagttttaatgacccatttgttgcagctgctattgcaaatgaaaaggaactt
gatctttctgaagaacaaaagaaaaattttagaaaggttaaagaagaagatgatgcaaat
gtagatctgaaactacaaattcatctcaaacggaggagacataggcagagacgtaaacag
gaggtcagtcagaaatttgtttccgcagttgatcaggtcttagaaagcaatttagataag
tcctcgtcgtgggttgacaattctaatcctgtttcaaatgagaaaaattgtgaagatggg
aatggtctgcctaataatcacaatgaggttgcatgccagaatgtccagacggatatgctt
gatgcttctgaaacttgtaatgatcttgacaataaagggccgatgaataatgctccttca
ttgtctgagcctgctttgcctgatcatactggacctagaggctccaagcgtccaaatgag
attgaggagctaaaagttgataacaagaagagtcggactgttatcatagatagtgatgat
gaaactcattttgtgaaggaaaattcacatcctaatgccactagcttggaccctgattct
aattccaaagaaaatattggcgagcctggtgctgattctattccattgcagagtcagaat
gagaagtttgactgtactgcttgtagtaagctagctgttgaagtgcaccgacatccactt
ctgaaagtaattatttgccgggattgcaaaagcttaatggaatataagatgcagatgaag
gattctgattgtgctgagtgttactgtggatggtgcggaggaggcagtgatttggtaagt
tgcaaaaaatgcaggacattgttctgcaccacttgtataaagaggaacattggtgcggaa
tgcttgtctgagatacagacattgggctggaagtgttgttgctgctgtccaagtctactg
cagagattatcattacagttagagaaagccatgggatctggaactttgatagtttctagc
tctgatagtgattctgataattcagattcagactcagattcagattcagatgtgaatgtt
gcatacagctctaagagaaggaacaaaaagaaaattcgaaggatccttgatgatgctgaa
ttaggagaagagactagaagaaaaattgcaatcgaaaaggaacgccaagaacgtctgaag
tctttgcaagtacagttttcggccaagtctaagataatgagctctgcaggctctaatggg
aatttatctgaaggtgctagtgttgaagtgcttggtgatgcttccactggttatgtagtg
aatgttgtaagggagaaaggggaagaagctgtcaggattcctccaagtatctcggctaaa
ttgaaggcccatcaggttacggggataagatttatgtgggaaaatatcatacagtctatc
agaaaagtgaagtctggggataaaggtcttggttgcattttagctcataccatgggcctt
ggtaaaacttttcaggtcataactttcttgtatactgctatgagaagtatcgacttggga
ttaaaaactgcactcattgttcttccggtgaatgtgctacataattggcggcatgagttt
atgaagtggaggccttcagagttaaagccacttcgtgtcttcatgctggaagatgtatca
agggaaagaagagctgaattgtttgctaagtggagggctaagggtggtgtcttcttgatt
gggtatacagcttttcggaacttatcccttggaaagaatgtaaaggatcggcacatggct
agagaaatttgttatgccttgcaggatggacctgatatacttgtttgtgatgaggcccat
atgattaagaatacgagggctgacacaacccaagccttgaaacaagtgaaatgccagcga
agaattgcattaactggatcacctcttcagaacaatctcatggaatattattgtatggtt
gattttgtaagagagggttttcttggaagcagccatgagtttaggaaccgcttccaaaat
cctattgagaatggtcagcatactaattcaactcttgatgatgtgaaaattatgaaccaa
aggtctcatatcctctatgaacagttgaaaggatttgtccagagaatggacatgaatgtg
gtgaagaatgacttgccgcccaaaactgtctttgtgattgctgtaaaactttctcccttg
caaaggaaattatacaagagatttcttgatgtgcatggattcactaaggacaaggtttcc
aatgaaaagattataaagagaagtttttttgctgggtaccaggcgttggctcagatatgg
aaccatcctgggatcttacaattgaccaaagaagacaaagactacgtaagaaggactgaa
gatgctgtagagaattttctcgtggatgacagttctagtgatgaaaacatagattataat
atggatattggagataagccaaagagtgcaaatgattatctgcagggaaaaaatggtgct
ggctttcttccaaaggattggtggaatgatcttcttcatggcaataattttaaagagctt
gattacagtggcaagatggttttactgcttgatatcctaaccatgtcttctggtgtgggg
gataaagtgttggtttttagccagagcataccaaccctagatctcatagaactttatctt
tcaagattacctcgaagtggcaaaagaggaaagttttggaagaaaggaaaggactggtat
aggctagatggaagaaccgagagctctgagaggcaaaagctggttgagagatttaacgag
cccacaaataagagggtgaagtgtactttgatttcaacaagagccggatctttggggatt
aatcttcatgctgctaatcgtgtagttattgttgatggttcttggaatccaacatatgat
cttcaggctatataccgggcttggaggtatggccaaacaaagccggtgtttgcttaccga
ttgatggctcacggaaccatggaagaaaaaatttataagcgtcaggtgacaaaggaaagt
ctggctgcaagggtggtagatagacaacaggtaggtaggactatctctaaagaagagatg
ttgcatctctttgaatttggtgatgatgagaacctggacactttggctgatctgggccta
gagaacggacatacaagtaacaacaatatgacgggccaagttgggaattctcagacaatg
cctcctcaaggaagctgctcttcagacaagataatggaaagtttacttggaaagcattat
ccaagatggatctccaattaccatgaacatgagacccttttacaagagaatgaagaagaa
aagctatcaaaagaagagcaggacatggcttgggaagtataccagagaacgttagaatgg
gaggaagtgcagcgagttcctctggatgaatctgcatctgaacgaaagccagatgcgtca
agcatgccccctcctgcgccagagaccagcctttcacaatctaagatgaggaatcggttg
gtacagaggaaatgcactaacctttcacacctgttgacacttagaagccagggcacaaaa
gttggttgcactacggtatgtggggaatgtgcccaggagataagctgggaggacctcaat
cgggatggtaagacagcgaggtga
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integrated database retrieval system
