Quercus lobata (valley oak): 115981465
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Entry
115981465 CDS
T07350
Name
(RefSeq) protein SMG7 isoform X1
KO
K14409
protein SMG7
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115981465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115981465
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
115981465
mRNA cycle factors
Common to processing body (P body) and stress granule
115981465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Phage_H_T_join_2
Motif
Other DBs
NCBI-GeneID:
115981465
NCBI-ProteinID:
XP_030959476
UniProt:
A0A7N2KMM4
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Position
1:17115572..17123925
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AA seq
995 aa
AA seq
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MMIVQMDKMSAPPSRERAQRLYEKNIELENKRRRSAQARIPSDPNAWQQIRENYESIILE
DHGFSEQHNIEYALWQLHYKRIEELRGHFSSALASAGSNTSQGVKGPARPDRITKIRLQF
KTFLSEATGFYHELILKIRDKYGLPLGYFSEESENRIVMEKDGKKSAEMKKGLISCHRCL
IYLGDLARYKGLYGEGDSKSREFAAASSYYLQAASLWPSSGNPHHQLAILASYSGDELAA
VYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQLPEDVKASVVKGSPVRVTGKGRGKGD
AKLASKDINSESSQVKERASAVPETYKSFCIRFVRLNGILFTRTSLETFAEVLSLVSSGL
CELLSSGPEEDLNFGADARENGLLIVRLIAILVFTVYNVRKEAEGQTYAEIVQRAVLLQN
AFTAVFELMGRILERCVQLREPSSSCLLPGILVFVEWLACCPDIAAGSDADEKQATIRSK
FWNHCISFLNKLLSNGPMSIDDDEDESCFNNMSRYEEDETENRLALWEDLELRGFLPLIP
AQTILDFSRKHSFGGDGNKEKMARIKRILAAGKALANVVKVDQETIHFDSKVKKFVIGVV
PQVSDDFMLPTTYSGIPNTNSIMIEKQMETSKNLGVLQPNPELLMEEEEEDEVIVFKPTV
AERRTDVVGLKWDQYGGLEPGQNASVGDLNFLGNSVSAPLGNLQQQIALDVGSQVPTSFG
NMVPQHFQSAQSHALKWPLEGEALLANGFKGLSFVENGHIMKSEQQDFGMSTPAFSASIQ
QAIGPNTSGMSYSLAKVPEAVIPSKIDAFASSGAMSDNLAVKTSSALPVGLRKSPVSRPV
RHIGPPPGFSPVPSKHVNEPISGSDLVNESPLMDDYSWLDGYQLPASAKGSMSNSSVNYP
SYSNPQPISISNGMNGTVSFPFPGKQVPAMPFSVENQKGWQEYQMLEQLNLHHEQQLQLQ
QQQQQQHQLVNGNQHFTPLPEQYKGQSVWTGRYFV
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgatgattgtacaaatggataaaatgtctgcccctccatcaagggagcgtgcccaacgt
ctttatgagaagaatattgaactggagaataagcgtcggaggtctgcccaggcacgaatc
ccatcagatcccaatgcatggcaacagattcgtgagaattatgagtcaataattcttgag
gatcatggtttctctgagcagcacaacattgaatatgctctatggcagctacattacaag
cgaattgaggaactgagaggacactttagttctgctctagcttctgcaggctcaaacaca
tctcagggtgtgaaaggccctgcacggccagaccgaattacaaaaataagattgcagttt
aaaacctttctttcagaagcaactgggttttaccatgaactcattttgaaaatcagagac
aaatatgggcttcctctgggttatttctctgaggagtcagagaatcgaattgttatggag
aaagatgggaagaaatctgctgaaatgaagaaaggtctgatatcttgtcatcgttgtctg
atatacttgggtgaccttgcacgttacaaaggattatatggggagggtgactccaaaagt
agggagtttgcagcagcttcaagttattacttgcaagctgcatctctttggccatcaagt
ggaaatccccatcatcagcttgctatattggcttcctattcgggggatgagctggcggct
gtttatcgatatttccggagtttggcagtggatagtccattttcaactgcaagggataac
ttgattgttgcatttgagaagaatcgtcagagttactctcaactacctgaggatgttaaa
gcttctgtcgttaaggggtcacctgtgcgggtgactggcaaaggaagagggaaaggggat
gcaaaacttgcatcaaaagatatcaactcagaaagtagccaggttaaggagagagcatct
gctgtgcctgagacgtataaatccttttgcatccgatttgttcgtctaaatggcattctt
ttcacacgtacaagcctggagacatttgcggaagttctttctttggttagcagtggttta
tgtgagcttctgtcttctgggcccgaagaagatctgaattttggtgcggatgctcgtgag
aatggacttctcattgttagacttattgccatccttgtatttacagtttacaatgtaaga
aaagaggctgaaggtcagacttacgcggaaattgtacagcgtgctgttctactccaaaat
gcatttactgcagtttttgagttgatgggacgcatattggagagatgtgtgcagctacgt
gaaccttcttcaagttgcctcttacctggcattctggtgtttgtagaatggttggcatgt
tgcccggatattgcagcaggcagtgatgcagatgaaaaacaggcaacgattagatcaaaa
ttttggaaccattgcatttctttcttaaacaagctcttgtccaatgggccaatgtccata
gatgatgatgaagatgagagttgctttaataacatgagcaggtatgaagaagatgaaaca
gaaaataggcttgctttgtgggaggaccttgagttaagaggtttcttgccactaattcca
gctcaaaccattttggatttttcaaggaagcattcctttggaggagatggtaacaaggaa
aaaatggctcgtattaaaaggattctagctgcagggaaggctctagcaaatgtggttaag
gttgatcaagaaacaatacattttgattcgaaagtgaagaaatttgttattggtgttgtg
cctcaagtctcggatgattttatgcttccaaccacttattcaggcatccctaatacaaac
agtatcatgattgaaaaacaaatggagacatcaaagaatttgggtgtcctgcagccaaat
cctgagctacttatggaagaggaagaggaggatgaagttattgtttttaaaccaacagtg
gctgagaggcggactgatgtggttggtttaaaatgggatcagtatgggggcctggagcct
ggtcaaaatgcttctgtgggtgatctgaattttcttggtaattctgtttcagctcctcta
ggtaatcttcagcagcagattgctcttgatgtgggttcacaagtgcctacatcctttggt
aatatggtcccccagcattttcaatcagctcagtctcatgctttgaagtggccactggaa
ggcgaagctcttcttgctaatggtttcaaaggtctaagctttgtggagaatggccatata
atgaaatccgagcaacaagattttggcatgtccactcctgcgttttcagcttccatccag
caagctatcggtcctaatacttctggtatgtcttacagtcttgcaaaagtcccagaagct
gtgataccatctaagattgatgcttttgcatcttctggagccatgtctgacaatttggct
gtaaagacatcatcagcattgccagtaggtttgagaaaaagtccagttagtcggcctgtt
agacacattgggcctccacctggtttcagccctgttccttctaaacacgtgaatgaaccc
atttctggttcagatttggtgaatgagagtccattgatggatgattatagctggttggat
ggatatcagttgccagcatcagctaaaggctctatgtcaaatagttcggtcaattaccca
tcttattcaaacccccagcccatcagtatcagcaatggcatgaatgggactgtcagtttt
ccatttcctggaaaacaagttccagccatgccattctcagtagaaaatcaaaaaggctgg
caagaataccagatgcttgagcagctaaatctacaccatgaacagcagttgcagttgcag
cagcagcagcagcagcagcatcaacttgttaatggaaatcagcactttactccactgcct
gaacaatataaaggacagtccgtttggacaggtcgttacttcgtgtga
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