Quercus lobata (valley oak): 115981520
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Entry
115981520 CDS
T07350
Name
(RefSeq) pre-mRNA-splicing factor 38 isoform X1
KO
K12849
pre-mRNA-splicing factor 38A
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115981520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qlo03041
]
115981520
Spliceosome [BR:
qlo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
115981520
Complex C
U4/U6.U5 tri-SnRNP related factors
115981520
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Gene cluster
GFIT
Motif
Pfam:
PRP38
HIND
Motif
Other DBs
NCBI-GeneID:
115981520
NCBI-ProteinID:
XP_030959577
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Position
3:complement(18906606..18922632)
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AA seq
399 aa
AA seq
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MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
HGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYL
EPLYNDYRKLRQKLPEGKFSLTHVDEVIDELLTKDYSCDIALPRIKKRWTLETLGSLEPR
RSVLEDDFEEEEEKEENDQLDGLEDEAHEKQDYYRGRSPARERDRDRRRDRDRYRERDYD
RDYDRDYDRERGRGRDRDRDRERDRDRDRDRDRDRDRDRDRYRLRDEKDYGRDRERDREW
EGRERERRDRDRGRRRSHSRSRSRSRDRKDREGGEHRKRHARSSTSPRRRDGAEENGTRE
EPKKKKERKEKKEDGTDHPDPEIAEANRLRASLGLKPLK
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccgtacggacccagcggcgaagagcatcagggggacgaacccacagaacctg
gtggagaagatcctgaggtcgaagatttaccagaacacgtactggaaggagcaatgcttc
ggtctaacggcggagacgctggtcgacaaggctatggagctcgatcacctcggcggtact
cacggcggtaaccgcaagcccacgccgtttatgtgcctcgtcatgaagatgctccagatt
cagcccgagaaggagatcgtcatcgagttcatcaaaaacgacgattacaaatatgtgcgg
atacttggtgctttttatttgcgtcttacaggaactgatgtcgatgtctaccggtaccta
gagcctctgtataatgattataggaagttaagacaaaaattacctgaaggaaagttctct
ttgacacatgtggatgaggttattgatgaacttctaacaaaagattattcctgtgacatt
gcattgccacgtatcaagaaaagatggactcttgaaacacttggttcattggaacctaga
cgaagcgttttggaagatgattttgaggaggaggaggagaaggaggagaatgatcaactt
gatggtttagaagatgaggctcatgaaaagcaggattattaccgtgggcgaagccctgcc
agggaaagagatagggacagaagacgcgaccgtgacagatacagggaacgagactatgat
agagactatgacagagattatgatagggaacgtggacgtggacgagatagggatagggat
agagagagggacagagacagggatagggacagggacagggacagggatagggaccgagac
cgttaccgcttgcgagatgaaaaggattatggtcgtgatcgggagcgagatagagagtgg
gaaggtagggagcgggagaggcgagacagggaccgtggcaggaggaggagtcactcaaga
agccgaagtaggagtagggatcggaaggatcgtgagggtggggagcaccggaagagacat
gcacgcagcagcaccagtcccagaagacgggatggagctgaggaaaatggcactcgggaa
gagcctaagaagaagaaagagagaaaggagaagaaagaggatggaacagaccacccagac
cctgagattgctgaagctaataggctgcgtgcatcccttgggttgaaacctttgaaatag
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