Quercus lobata (valley oak): 115981625
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Entry
115981625 CDS
T07350
Name
(RefSeq) protein CHROMATIN REMODELING 5 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115981625
03036 Chromosome and associated proteins [BR:
qlo03036
]
115981625
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
115981625
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
115981625
SLIK complex
115981625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
Helicase_C
Chromo
CHD1-like_C
ResIII
HDA2-3
DEAD
Chromo_MIT1
SWI2_SNF2
DpnD_N
OAM_alpha
Motif
Other DBs
NCBI-GeneID:
115981625
NCBI-ProteinID:
XP_030959768
UniProt:
A0A7N2KML3
LinkDB
All DBs
Position
1:complement(17701669..17728677)
Genome browser
AA seq
1764 aa
AA seq
DB search
MAFFRNYTNETVSHSVLEEKGQEQSEDRMRSSVGNGDVDATSSDREFDINLDVQYQSEAE
AVGADRLQNEEAVNDVNTRTSNFQPTSRRMAMAGKWGSTFWKDCQPMTRGGSDSGQDSKS
GSEYRNAEGVEDNSSDGREDRLESEDDDRQKEVGKGHKVHSDVPADEMLSDEYYEQDGEE
QSDSMHYRGFHHSVGPNSRPQSKPVAISSHVKRNSRALNDNDADDDDNNDDADYDEEDEA
DEDDPDDADFEPDSGVTIGRTGNKHKDWDGEDSDEDDDSVDDIEGSDEDDSYYAKKPKGR
QQGKVGRNIRSTRDHKSYRASSRQRRMKSSFEEEESSAEDSDNDSDEAFKSMTRRGVNLR
KNGGRSTVSTNKSGRNSEVRTSSRSVRKVSYVESEESEEVDEGKKKKGQKEEIEEEDGDC
IEKVLWHQPKGTAEDALRNNRSTEPVLWSHLYDTEPDWNEIEFLIKWKGQSHLHCQWKSF
SELQNLSGFKKVLNYTKKVMEDVRYRKAISREEIEVNDVSKEMDLDLIKQNSQVERIIAD
RISKDSSGNVIPEYLVKWQGLSYAEATWEKDVDIAFAQESIDEYKAREAAMAVQGKMVDF
QRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSV
SMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNVIVYVGTRASREVCQQYEFY
NEKVGRNIKFNAILTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTK
NKLLITGTPLQNSVEELWALLHFLDHEKFKSKDDFVQNYKNLSSFNENELANLHTELRPH
ILRRVIKDVEKSLPPKIERILRLEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVV
ELKKCCNHPFLFESADHGYGGDSRNDGSKLERIILSSGKLVILDKLLVRLHETKHRVLIF
SQMVRMLDILAEYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLG
INLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKM
VLDHLVIQKLNAEGRLEKKESKKASFFDKNELSAILRFGAEELFKEDKNDEESKKKLLSM
DIDEILERAEKVEEKEPGGEQGNELLSAFKVANFGSAEDDGSFWSRWIKPEAIAHAEDAL
VPRAARNTKSYAEANQPEMSNKRKKKGPEHQERSQKRRRADYSVPAVPMIEGATFQVRRW
SYGNLSKRDALRFSRAVMKFGNQSQISFIAEEVGGAVGAAPPEAQIELFDALIDGCKEAV
EVEILDPKGPLLDFFGVPVKANDLITRVQELQLLAKRISRYEDPIAQFRVLTYLKPSNWS
KGCGWNQIDDARLLLGIYYHGFGNWEKIRLDERLGLMKKIAPVELQHHETFLPRAPNLRD
RANALLEMELAVLGKKANAKVGRKTSKKERENLLNTSISRGRAKKGKPGSPKLNVQMNKG
RPQKPMKLEPLVKEEGEMSDNEEVYEQFKEVKWMEWCEDVMVDEIKTLKRLQRLQTTSAD
LPKEKVLSKIRNYLQLLGRRIDQIVLEHEEEPYKQDRMTMRLWNYVSTFSNLSGERLHQI
YSKLRQEQDEEGAVGPSHVNGSTHGPIGQDGDPNYFPPFHRQFERTRGFKNMSNSQVSEP
VVKGFDTGKFEAWKRRRRAETDNHIQVQPPALRPMSNGARVADPNSLGILGAGPSDNRHL
GGEKPFRMRQTGFPPRQGFSSGIK
NT seq
5295 nt
NT seq
+upstream
nt +downstream
nt
atggccttttttaggaactatactaatgaaacagtttcacacagtgttctggaagaaaaa
ggccaggaacagagtgaagacaggatgaggagctcagtagggaatggggatgttgatgcg
acttcgagtgatagagaatttgatataaacctggatgtgcagtatcaaagtgaagctgaa
gcggttggtgctgataggctgcaaaatgaggaagctgttaatgatgttaatacgagaacg
tccaatttccaaccaacttcaaggagaatggctatggcaggaaaatggggttcaaccttt
tggaaggactgccaacctatgactcggggtggctctgattctgggcaggattctaaaagt
gggtccgagtatagaaatgcagaaggggtggaagacaattcatcagatggcagggaagat
agattagagtcagaagatgatgataggcaaaaggaagtgggcaagggtcacaaggtccac
tccgatgtccctgcagatgagatgttatctgatgaatactatgagcaggatggggaagag
cagagtgactcaatgcactatagagggtttcatcattccgttgggccaaattctaggcca
caatcaaagcctgttgctattagtagccacgtgaaaaggaattctagagctttgaatgac
aatgatgcagatgatgacgacaataatgatgacgctgattacgatgaagaggatgaggca
gatgaggatgaccctgatgatgcagactttgaacctgattctggtgtcacaattggtcgc
acagggaacaagcataaagattgggatggtgaagattctgatgaagatgatgacagtgtt
gatgatatagaaggttcagatgaagatgattcctattatgcaaagaaacctaagggtagg
caacaaggtaaagttggacgtaatataaggtccactagagaccataaatcatatcgtgca
tctagtcgacagaggagaatgaaatcatcatttgaagaggaagagtcctcggcagaggac
tctgacaatgacagtgatgaggcttttaaaagcatgacaaggagaggtgtaaatctccgt
aaaaatggtggccggtccaccgtgtcaacaaataaatctggacgaaacagtgaggtccgt
acttctagtaggtcagttcgaaaggtatcatatgttgaaagtgaagaaagtgaagaagtt
gatgaaggcaaaaagaaaaagggccaaaaggaggaaattgaagaagaggatggtgactgc
attgagaaggttctgtggcatcagccaaagggcacggctgaagatgctctaaggaacaat
agatcaacggagcctgttctgtggagccacttgtacgatactgagccagattggaatgag
attgaattcttgataaaatggaaaggccaatctcatttgcactgtcagtggaagtcattt
tctgagctacaaaatcttagtggttttaagaaagttttaaattacacgaaaaaggtgatg
gaggatgttagatacaggaaggcaatctcacgcgaggagattgaggtaaatgatgtgagc
aaggaaatggacttagatctcatcaagcaaaatagtcaggtggagagaattattgcagac
cgaatcagtaaagatagttctggcaatgtcataccagagtatttagttaagtggcaagga
ttgtcttatgctgaagcaacatgggagaaggatgttgatatcgcatttgctcaagaatcc
attgatgagtacaaggctcgtgaggctgcaatggctgtacaagggaaaatggtggatttc
cagcgcaagaagagcaaagcaagcctaaggaagcttgacgaacagcctgaatggttgaag
ggaggaaagcttcgtgattatcagcttgagggtttgaattttcttgttaacagttggagg
aatgatacaaatgtaatcttagctgatgaaatgggtcttgggaaaactgttcagtcagtt
tccatgcttggttttttacagaatgctcaacaaatccatgggccttttcttgttgttgta
ccattatctactttgtcaaactgggcaaaagaatttaggaagtggcttcctgatatgaat
gttattgtatatgttggtacccgcgcaagccgagaggtttgtcagcaatatgaattttac
aatgaaaaagttgggcggaatataaaatttaatgcaattttgactacatatgaagtagtt
ctgaaggataaggctgttctctcgaagatcaaatggaattatctgatggttgatgaagct
cataggttaaagaatagtgaggcacaattgtacacaaccctttcggaatttagcaccaag
aacaagttgcttatcactggaactcctttacaaaacagtgtggaagaactatgggctttg
cttcacttccttgaccatgagaagttcaagagtaaggatgattttgttcagaattacaag
aatctcagctcattcaatgagaatgagcttgctaatcttcatacggaattgaggcctcat
attctccgaagagttataaaggatgtagagaagtctttgcctccaaaaattgagcgtatt
cttcggcttgaaatgtcccctcttcagaagcagtactacaagtggattttggaacgcaac
tttcatgacctgaacaaaggagttcgtgggaatcaggtttcacttttaaatattgtggta
gagttgaagaaatgctgcaatcatcctttcctgtttgaaagtgcggaccatggttatggt
ggggactcaagaaatgatggcagtaaactggagagaattatcttaagcagcgggaagcta
gtcatacttgataagctacttgttagattacatgagacaaagcatcgtgttctgattttt
tcccagatggtcagaatgctggatatactagcagagtatatgtcgcttagagggtttcag
tttcagaggcttgatggtagtacaaagtctgagttacgccagcaggcaatggatcatttt
aatgctcctgggagtgatgatttctgcttccttctttcaactcgggcaggtggcctgggt
atcaaccttgcaacggctgacacagttataatatttgattcagactggaatccccaaaat
gacttacaggcaatgagtagagctcatagaattggacaacaagaagttgttaacatctat
agatttgttacaagcaaaagtgttgaggaagatatcctggagcgagccaagaaaaaaatg
gttcttgaccatttggtgatccaaaaattaaatgcagagggcagattggagaagaaagaa
tcgaaaaaagcgagtttctttgacaaaaatgagctatcggctatcttaaggtttggagca
gaggaactttttaaggaagacaagaatgatgaagaaagcaagaagaaacttttaagcatg
gatattgatgaaattcttgaaagagcagagaaagttgaagagaaggaacctggtggagag
caagggaatgaattgttgagtgcttttaaggttgccaatttcggtagtgctgaagatgat
gggagcttttggagtcgttggataaagccagaagcaatagcccacgctgaagatgctcta
gttcctcgtgctgcaagaaataccaaaagctatgcagaggctaaccaacctgagatgagt
aataaaaggaaaaagaaaggacctgagcatcaggagagatcgcagaaacgacgtagagct
gattattcagtgccagcagtaccaatgatcgagggagctacttttcaagtgagaagatgg
tcttatgggaatttgtctaaaagagacgcattgcgtttttctcgtgcggtcatgaaattt
ggaaatcagagccaaatcagcttcatagctgaggaggttgggggtgcagttggagcagct
ccacccgaagcacagattgaactcttcgatgctttgattgatggatgtaaagaagcagtt
gaagtagaaatcctggacccaaaggggcctttgttggatttctttggtgttcctgtgaag
gctaatgatcttatcactcgtgttcaagagcttcaactcctagcgaagcgcattagtcgc
tatgaagatcccattgcccaattccgggttttgacgtacctcaaaccttcaaactggtcc
aaaggttgcggctggaatcagattgatgatgcaagattgcttctgggaatatactaccat
ggttttggcaattgggaaaagataaggttagatgaaaggcttggccttatgaagaagatt
gctccggtggaacttcaacaccatgaaacctttttaccacgtgctccaaatttgagagac
cgtgctaatgctcttctagaaatggaacttgcagttcttggaaagaaagcaaatgctaaa
gtgggtcgtaaaacttctaagaaggagagggaaaatcttctgaacacctcaatctctcgt
ggccgggctaagaaaggaaagcctggatctcccaaactcaatgttcaaatgaacaaagga
agacctcagaaacccatgaaacttgaacctttagtaaaagaggagggcgaaatgtcggac
aatgaagaagtatatgagcagttcaaggaagtgaaatggatggaatggtgtgaagatgtc
atggttgacgaaataaaaaccctgaaacgtcttcagaggttgcagaccactagtgctgat
ctcccaaaggaaaaggtgctttcaaaaattcggaattacttgcagcttctaggccgaagg
atagatcaaattgttttagaacatgaggaggaaccgtataaacaagataggatgaccatg
cgactttggaactatgtctctaccttttcaaatctctctggtgagaggcttcatcaaatt
tactcaaaacttagacaggagcaggatgaggagggagcggttggcccttcccatgttaat
ggatccacacatggtcctattggccaagacggtgaccccaattattttcctcctttccat
cggcaatttgagaggacaagagggttcaaaaatatgagtaactctcaagtgtcagaacca
gttgtcaagggttttgatacagggaaatttgaagcatggaaacgaaggagaagagcagaa
actgataatcatatccaagttcagcccccagctctaagacctatgagtaatggtgctcgg
gtagctgatccaaattcattggggattcttggggctggaccatctgacaacagacatttg
ggtggtgagaagccttttaggatgcgtcagactggtttccctccgaggcaaggtttctca
tctggtatcaagtag
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integrated database retrieval system
