Quercus lobata (valley oak): 115981732
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Entry
115981732 CDS
T07350
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03013
Nucleocytoplasmic transport
qlo03015
mRNA surveillance pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115981732
09122 Translation
03013 Nucleocytoplasmic transport
115981732
03015 mRNA surveillance pathway
115981732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115981732
03041 Spliceosome [BR:
qlo03041
]
115981732
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
115981732
Spliceosome [BR:
qlo03041
]
Common components
Common spliceosomal components
Cap binding complex
115981732
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
MIF4G
SINE3_TM
CCDC39
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
115981732
NCBI-ProteinID:
XP_030959920
UniProt:
A0A7N2KMW8
LinkDB
All DBs
Position
1:17986976..18010871
Genome browser
AA seq
860 aa
AA seq
DB search
MSSWRDLLLRIGDKSAEYGTSSDFKDHIETCFGVLRRELEHSEDEILNVLLDCAEQLPHK
IPLFGTLIGLMNLENEDFVRKVVEKTQTNLQDGLDSGNCNRIRILMRFLTVLMCSKVIQP
SSLVVVFETLLSSAATTVDEEKGNPSWQACADFYITCILSCLPWGGAELMEQVPEEIERV
MVGVEAYLSIRKHASDTGLSFFEDDDETENGEKDFLEDLWSRVQDLSNNGWKLDSVPRPH
LSFEAQLVAGKSHEFVPISCPEQHHSPSTLSVINHGQQKHEAELKYPQRIRRLNIFPASK
AEDLQPIDRFVVEEYLLDVLFFFNGSRKECASFMVGLPVPFRYEYLMAETIFSQLLMLPQ
PPFKPIYYTLVIIDLCKALPGAFPAVVAGAVRALFEKIADLDMECQTRLILWFSHHLSNF
QFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPGLEELLPPKGG
PNFIFSVEGDRERTEQHALSTDLCNMVKGRAAAREIISWVEESVLPVHGLEATLKVVVQT
LLDIGSKSFTHLITVLERYGQVIAKLCPDQDKHAMLIAEVGYYWKNNAQMAAIAIDRMMG
YRLVSNLAIVRWVFSPENIDQFHTSDHPWEVLRNAVSKTYNRISDLRKEISSLKKVIISA
EEAATKAKVELEAAESKLSLVDGEPVLGENPAKLTRFKSNAEKKKEEEVSARESLEAKDA
LLARALDENKALFLSLYKNFSIVLTERLPDPSRAGTLRELKSTHADSMAVDLEESAAMEV
DNENGRQKSQSNGGRTSNGYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHIEKLESEVLT
ENTHPLFRKAVYCGLRRPNN
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgagcagttggagggatcttcttctccgaatcggtgacaagtcagcggagtacggcacc
tcctccgacttcaaagaccacattgaaacatgtttcggcgtacttcggcgagagttggag
cactctgaggatgaaattttgaatgtccttcttgattgtgctgaacaattgcctcacaaa
attcctttatttgggacactgattggcttgatgaacctggaaaatgaggacttcgttagg
aaagtagtggagaaaactcaaactaatcttcaggatggcctggattctggaaattgcaac
aggattcgtattttgatgcgatttctgactgttttgatgtgcagtaaagtcatccaaccc
agttccctggttgttgtattcgagacattattatcatcagctgccacaacagtagatgag
gagaagggaaatccctcttggcaagcatgtgctgacttttacataacttgcattttatct
tgtctcccatggggaggagcagaactgatggagcaagtacctgaggagattgagagagtc
atggttggtgtagaagcttacttgagcatcagaaagcatgcttctgacactggtttatct
ttttttgaagatgatgatgaaactgagaatggtgaaaaggatttcctggaagatttatgg
agtcgggtacaagatttatccaacaacgggtggaaacttgacagtgttcctagacctcat
ctttcatttgaagctcagctggttgctggaaagtctcacgagtttgtgcccatcagctgc
cctgagcaacatcattcaccttcaacactttctgtgataaatcatggtcaacaaaagcat
gaagcagagttaaagtatcctcaaaggatacgtaggctaaatatatttccagccagtaaa
gctgaggacctacaacctattgatcgattcgttgtggaagagtatctcctagatgtgctt
ttcttctttaatggcagtcgaaaggaatgtgcttctttcatggttggcctgcctgtacct
ttcagatatgagtatcttatggcagagactattttctcccagttacttatgcttccacaa
ccccctttcaagccaatatattacacactggtcatcattgacctctgtaaggctcttcct
ggggcctttcctgcagttgtagcaggtgcagtccgcgctctttttgagaaaatagctgat
ttggatatggaatgtcagacaaggctcatcctttggttttcgcatcacctatcaaacttc
caattcatctggccatgggaagagtgggcttatgtcttagacctcccaaaatgggccccg
cagcgcgtgtttgttcaggaggttttggagagagaagtccgtttgtcgtactgggacaaa
gtcaagcagagcatagagaatgcacctggtttagaagaactgcttcctccaaagggtgga
ccgaacttcatattcagtgttgaaggtgatagagaaagaactgaacagcatgcactttct
acagatctatgtaacatggtcaaaggaagggcagctgcccgtgaaataatttcttgggtt
gaagaaagtgtgcttcctgttcatggtctggaagctactcttaaagtggttgtgcaaact
ctccttgacattggatctaaaagctttactcatttgatcactgtcttggagagatatggt
caagtaattgcaaagttgtgtcctgatcaagataagcatgccatgcttatagctgaagtt
ggttattactggaagaataatgctcaaatggcagctatagcaattgataggatgatggga
tatcggcttgtatctaatttggccattgtgagatgggtcttctctccagaaaatattgat
caatttcatacatctgatcatccatgggaggttctaagaaatgcagttagtaagacatat
aatcgtatctcagatcttaggaaagaaatatcatctcttaagaaggttattatatcagct
gaagaagctgcaacaaaggcaaaagtcgaattagaggctgcagagtcaaagctttcactt
gtagatggtgaacctgtccttggtgaaaaccctgcaaaattgactcgtttcaaatccaat
gctgaaaagaaaaaagaggaggaggtatcagcacgtgagtctttggaggccaaggatgct
cttcttgctcgagcccttgatgaaaataaggcattgttcctctctttgtataaaaacttc
tctattgtattgacggaacgattgcccgacccttctagagctggaacattgcgggaatta
aagtctactcatgcagattcgatggcagttgaccttgaagaatcagcagcaatggaggtg
gacaatgagaatggcagacaaaaaagtcagtcaaatggtggaaggacaagcaatggttat
aacataggtgaaaaagagcagtggtgtttgtcgactttgggctatgtcaaggccttctca
agacaatatgcttctgagatatggcctcacattgagaagttggaatcagaggtattaacg
gagaacacacatcctctctttcgaaaagctgtttattgtggccttcgtcgaccaaacaat
tag
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