Quercus lobata (valley oak): 115981923
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Entry
115981923 CDS
T07350
Name
(RefSeq) U3 snoRNP-associated protein-like EMB2271
KO
K14793
ribosomal RNA-processing protein 9
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
qlo03009
]
115981923
Ribosome biogenesis [BR:
qlo03009
]
Eukaryotic type
90S particles
Other 90S particles
115981923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_SPT8
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF12
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
115981923
NCBI-ProteinID:
XP_030960222
LinkDB
All DBs
Position
3:complement(9295987..9304405)
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AA seq
530 aa
AA seq
DB search
MKKKVSAAPRGGGGGGRGRGRGGRGRGGARKDEKFSEDSFFMAESKKRRKISDDADVIDS
GESDDERGYGFRGGSDGEYDGGEVETADEVRQRVAMAQLDKYRRIAKEEEDEDDEDDSDE
GIDRVGEKEGLRDSLVAKILQQEQLEESGRVRRAMASRVQKPKATGGFKVLLKHKQSVTA
VALSEDDSRGFSASKDGNILHWDVESGKREKYQWPSDDVIRSHGAKNPQGSAKKHSRNVL
ALAVSSDGRYLATGGLDRHVHLWDTRTRDHIQAFPGHRGSVSCLTFRQGTSELFSGSFDR
TVKIWNAEDRAYMNTLFGHQSEVLSIDCLRKERVLTVGRDRSMQLFKVPEESRLVFRAPA
SSLECCCFVSNDEFLSGSDDGSIELWTMLRKKPAHIVKNAHPLLAANTNLEQKNSEIIPN
GHKENGNHSYESYHCQSAYSWVSSVTVCRNSDLAASGAGNGSVRLWDIESETKDIRPLFD
LPLVGFVNSLAFAKSGQFLVAGVGQEPRLGRWGRIKSAQNGIAVHSLKLS
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagaaagtgtcggcagctccaagaggaggaggaggaggaggaagaggaagagga
agaggaggtagaggaagaggaggggcaagaaaggacgagaaattttcggaggattcgttt
ttcatggcggaatcgaagaagcggcggaagatttcggacgatgcggacgtgatagacagc
ggcgagtcggacgatgagaggggttatggattccgcggcggttccgatggggaatatgac
ggcggcgaagttgagaccgccgacgaggtgaggcagcgcgtggctatggcacagttggat
aagtatcgtagaattgctaaggaagaagaggacgaagacgatgaggacgacagcgatgaa
gggatcgatagggtaggcgagaaggaaggcctcagggactcgcttgtcgcgaaaattttg
cagcaggagcagctggaagagagtggccgtgttcgccgagctatggcctctagggtacaa
aagccgaaagctactggtgggttcaaagtgttattgaagcacaaacaatctgtgactgct
gtggcattgtcagaggatgactcgaggggcttttcagcttccaaggatggcaacattttg
cattgggatgtagaaagtgggaaacgcgaaaaataccaatggcctagtgatgatgtaata
aggtcccatggagccaagaatccacaaggttcagctaagaagcatagtagaaatgtttta
gcactagctgttagctctgacggtcggtatttggctactggaggattagatcgccatgtt
catttgtgggatacccgtacacgagaccatattcaggcctttccaggtcacagaggatct
gtatcatgtttaacctttaggcaagggacttcagaacttttctctggttcatttgatcga
acagtcaagatatggaatgcagaagacagagcctacatgaatacattatttggccaccag
agtgaagtattatctattgattgtttacggaaggaaagggtgttgactgttggacgagat
cgaagcatgcagttgtttaaggtccctgaggagtcacgtttagtatttcgtgcccctgca
tcttctctggagtgttgttgttttgttagtaatgatgaattcttatctggctccgatgat
ggaagtattgagctttggaccatgttgcgaaagaagcctgcacacattgtaaagaatgct
catcctttgttggctgcaaacacaaatctcgagcaaaaaaatagtgaaataatccctaat
ggacataaagaaaatggtaaccatagttatgaaagctatcattgtcaatcagcatattcc
tgggtcagttctgtcactgtatgtagaaacagtgatcttgctgcatcaggagccggtaat
ggttctgttcgattatgggatattgaaagtgagaccaaggacattcgaccattgtttgac
cttccattggttgggtttgtgaattccttagcttttgcaaaatctggacagtttctggtt
gctggagttgggcaggaacctcgtttgggaaggtggggacgtatcaaatctgctcagaat
ggaattgcggttcattcccttaagctctcataa
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