Quercus lobata (valley oak): 115982155
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Entry
115982155 CDS
T07350
Name
(RefSeq) replication factor C subunit 1-like isoform X1
KO
K10754
replication factor C subunit 1
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03030
DNA replication
qlo03410
Base excision repair
qlo03420
Nucleotide excision repair
qlo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115982155
03410 Base excision repair
115982155
03420 Nucleotide excision repair
115982155
03430 Mismatch repair
115982155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
qlo03032
]
115982155
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115982155
DNA replication proteins [BR:
qlo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
115982155
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
115982155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
RCF1-5-like_lid
AAA_22
AAA_30
Rad17
PTCB-BRCT
AAA_19
BRCT_2
AAA_18
nSTAND3
AAA_5
Gp44_lid
RuvB_N
AAA_assoc_2
Zeta_toxin
Sigma54_activ_2
AAA_14
AAA_24
AAA_16
AAA_28
RsgA_GTPase
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
115982155
NCBI-ProteinID:
XP_030960542
LinkDB
All DBs
Position
1:complement(19077236..19090721)
Genome browser
AA seq
1016 aa
AA seq
DB search
MAENKQADIRKWFMKSHDKGNAKESKPAIPAPTNKSQPEKPARASPESSGRRKTSKYFAT
DKQKPKDEKETEELPTKRKAQKHNDESVKPPPAKKVHIVDDDDDDDDDFVFSSSRKKSND
VTPSKKLKSGSGRGIAQKPVDIEEGDDDDDKDFETPLKSGGRGRGGRGSSATPAGGRGRG
GAQKPVDIEEGDEDDDKDIETPLKSGGRGRGGRGSSAAPAGGRGRGGGRGGFMSFGERKD
PPHKGEKEVPEGAPECLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSISKKTNYLLC
DEDIGGRKSSKAKELGTSFLTEDGLFDLIRASKPAKAPVQEESKRPVDKVAPLPKKSPQK
IETKKDSIGNSLATNVSGKGLTSGVSPAKHKTKTVAKSDLTWTEKYKPKVPNDIIGNQSL
VKQLHDWLRSWNEQFLDTGNKKKGKKQNDSGAKKAVLLSGTPGIGKTTSAKLVSQMLGFQ
AIEVNASDSRGKADAKIEKGIGGSNANSIKELVSNEALSVNMDRSKHPKTVLIMDEVDGM
SAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQ
VATAEGLQVNQIALEELAERVNGDMRMAINQLQYMSLSMSVIQYDDIRQRLLSSAKDEDI
SPFTAVDKLFGFNAGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSSAGKDDNGIKRMN
LIARAAESIGDGDIFNVQIRRYRQWQLSQSSSLASSIIPAALLHGQREILQQGERNFNRF
GGWLGKNSTMGKNLRLLEDLHVHLLASRESSSGRETVRVEYLTLVLKRLTGPLRELPKDE
AVQKVVEFMNIYSISQEDFDTIVELSKFQGHPNPLDGIQPAVKAALTKAYKEGSKTRMVR
AADLITLPGVKKAPKKRIAAILEPSDDGLVDGGSTLAEGEEENSSDTDELEGSANGEKLQ
MELQSLNSKGMQVELDLKGTGNSSAKKTPAGRGKGGSGSSEKKGARGSGAGAKRKR
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaataagcaggcagatataaggaagtggtttatgaaatcccatgacaagggc
aatgccaaggaatccaagcctgcaattcctgccccaaccaataaatcacagcccgaaaaa
ccggctcgtgcaagcccagaaagttcgggcagaaggaaaactagcaagtattttgctact
gacaaacaaaagccaaaagatgaaaaggagacagaggaacttccaacaaaacgaaaggct
caaaagcataatgatgaatcagttaaacccccacctgctaaaaaagttcacatagttgac
gatgatgatgatgacgatgacgactttgtcttttctagttcgaggaagaaatcgaatgat
gtgactcctagtaagaagttgaaaagtgggtctggtaggggaattgcacagaaacctgta
gacattgaagaaggtgatgatgatgatgataaagattttgaaactcctcttaagtctggt
ggaaggggacgtggtggaagaggttcatcagcaacaccagctggtggaaggggcagaggt
ggtgcacagaaacctgtagacattgaagaaggcgatgaggatgatgataaagatattgaa
actcctcttaagtctggtggaaggggacgtggtggaagaggttcatcagcagcaccagct
ggtggaagaggcagaggtggtggacggggtggatttatgagctttggagaaaggaaagat
cccccacataaaggagaaaaggaagtccctgagggtgctcccgagtgtttggctggttta
acttttgtaattagtggaacacttgacagcctagagcgtgaagaagctgaagatttgatt
aaacgccatggtggtcgtatcactggatccatcagcaagaaaacgaattatcttttatgt
gatgaagatattgggggtcggaaatcctcaaaggctaaagagctaggtacttcctttctc
actgaggatggattgtttgatctgatccgtgcatcaaaacctgcaaaagcacctgtacaa
gaagaatctaagaggccagtggataaggttgcacctctaccaaagaaaagcccacagaaa
atagaaacaaagaaagatagcattggcaactcgttggcaacaaatgtatctggcaaaggc
ttgacctcaggggtgtccccagctaagcataaaactaaaacagttgcgaagagtgactta
acatggacggaaaaatataagccaaaggttccaaatgatattattggaaatcagtcactg
gttaagcaacttcatgactggttgagaagttggaatgagcaatttcttgatactggaaat
aagaaaaagggaaaaaaacaaaatgattctggtgccaaaaaagctgtgctattaagtgga
actcctggtataggaaaaactacctccgcaaagttggttagtcagatgctcggtttccag
gcaatagaggtaaatgctagtgacagtcgtgggaaggctgatgccaaaattgagaaagga
attggtggaagcaatgcgaattctataaaggaacttgtcagcaatgaggccttgagtgtc
aacatggatcgatcaaagcatccaaaaactgtgctgattatggacgaggttgatgggatg
tctgctggagataggggtggaattgctgaccttattgctagcatcaagatttccaaaatt
cctattatctgcatttgtaatgatcgatacagtcagaaactaaaaagtcttgtgaactac
tgtttgcttctcagctttcgaaaacctacaaaacagcagatggcaaagaggttaatgcaa
gttgcaactgcagaagggcttcaagttaatcagattgctcttgaggaacttgcagaaaga
gttaatggagatatgcgcatggctataaaccagttgcagtatatgagcctctccatgtca
gtcattcaatatgatgacattaggcagcgtcttcttagcagtgcaaaggacgaagatatt
tcacctttcactgctgttgacaagctgtttggttttaatgcggggaagttgaggatggat
gagcggattgacctgagcatgagtgatcctgatctagtccctcttcttattcaggaaaat
tatattaattacaggccaagttctgctggtaaggatgacaatggaatcaaacgtatgaac
ttgattgcccgtgctgctgaatccattggtgatggggatattttcaatgttcagattcga
cggtatcgacagtggcagctctctcaaagtagttcacttgcatcatctataatccctgct
gcactgttgcatgggcagagggaaatacttcaacagggagagaggaattttaatagattt
ggagggtggctgggaaagaactcaacaatgggtaaaaatctgaggcttttggaggatttg
catgttcatcttctcgcttctcgtgaatctagttcggggagggaaaccgtgcgagtagaa
taccttactcttgtcctgaaacgattgactgggccactgcgggagctgcctaaggatgaa
gcagttcaaaaagttgttgagttcatgaatatatactcaattagtcaggaggatttcgat
acaattgtggagctatcaaaatttcaggggcatccaaatccgctggatggcatacagcct
gctgtgaaagctgctctcaccaaagcttacaaagaaggaagcaaaacaagaatggtacga
gctgcagatttaatcacacttcctggagtgaaaaaagctcctaaaaagcggattgcagca
attctggagccatctgatgatggattagttgatggtggtagcacattggcagaaggtgaa
gaagaaaattcttcagatacagatgagctagaaggttctgccaatggtgagaagctacag
atggaacttcagagtttgaattcaaaaggaatgcaagtggagttggatctcaagggcaca
ggaaattcaagcgctaagaaaacaccggctggcagaggaaaaggtggttccggatcttca
gaaaagaaaggtgcacggggttcaggggctggtgccaagagaaaaagatga
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