Quercus lobata (valley oak): 115982173
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Entry
115982173 CDS
T07350
Name
(RefSeq) replication factor C subunit 1-like isoform X1
KO
K10754
replication factor C subunit 1
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03030
DNA replication
qlo03410
Base excision repair
qlo03420
Nucleotide excision repair
qlo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115982173
03410 Base excision repair
115982173
03420 Nucleotide excision repair
115982173
03430 Mismatch repair
115982173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
qlo03032
]
115982173
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115982173
DNA replication proteins [BR:
qlo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
115982173
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
115982173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
RCF1-5-like_lid
AAA_30
AAA_19
AAA_22
PTCB-BRCT
Rad17
nSTAND3
BRCT_2
AAA_18
AAA_assoc_2
Sigma54_activ_2
RuvB_N
AAA_24
AAA_14
Zeta_toxin
AAA_16
AAA_5
Gp44_lid
AAA_28
NTPase_1
Mg_chelatase
Myosin_head
AAA_17
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
115982173
NCBI-ProteinID:
XP_030960567
LinkDB
All DBs
Position
1:complement(19096416..19115999)
Genome browser
AA seq
979 aa
AA seq
DB search
MSGNKQTDIRKWFMKSHDKGNGKESKLANPAPTNKSQPEEPAHASQESSDRRKTSKYLVT
DKQKPKDEKETQELPTKRKAQKHNDESVKPPPVKKLHIVDDDDDDDDFILSSSRKNSVDV
TSRKKLKSGSGRGIAQKPVDIEEGDEDDDKDIDTHLKSGGIGSSAEPASGRGRGSGWGSF
INFGERKDPPHKGEKVVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSIS
KKTNYLLCDEDIGGRKSSKAKELGTAFLTEDGLFDMIRASNPAKAPVQEGSKRPVVDKVA
PLPKKSPQKIEAKKDSIGNSLAAAVSGKGLISGLSPAKHKTQTVAMNALTWTEKYSPKVL
KDIIGNESLVDRLRKWLANWNAQFLDTGNKKKSKRHQSKKEEEKGKKQINSAAKKAVLIS
GTPGIGKTTSAKLVSQMLGFQAIEVNASDSRGKADTRIEKGIAGSNANSIKELVSNEALS
VNMDRSKHPKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVN
YCLLLEFKKPEESQMMAKRLMEVANAEGLQVNQIVLKELAERVNGDMRMALNQLQYMSLS
MSVIKYDDIRQCLHSGAKDQDISPFTAVDILFRSNGKLRMDEQIDLSMSDPDLVPLLIQE
NYINCRPSSVGKDDNGIKCMSLIARAAESIGDGDIINVQIRRYRQWQLSQIGSLASCIIP
AALLHEQMETRKQRKNNFIRFGGWLGKNSTTGKNLRLLEDFHVRLLASRECSLGRETLRV
EYLTLLTLVLKRLTEPLQELPKDGAAQKFVEFMNMYSISWEDFDTIVELSKFQGHPNPLD
GKQRAVKATLTKAYKEGRKTRMVRAADLVKLPGVKKAPKKRIAAILEPSDDGFVDGGGST
LAEGEEDNSSDMDELEGPANVEKLQMELQSLNSKGMQVEFDMKGTGKSKKTPVGKGNGGS
GPSEKKGAWGSVAGAKRRR
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggaataagcagacggatataaggaagtggtttatgaaatcccatgacaagggc
aatggcaaggaatccaagcttgcaaatcctgccccaaccaataaatcacagccagaagaa
ccggctcatgcaagccaagaaagttcagacagaaggaaaactagcaagtatcttgttact
gacaaacaaaagccaaaagatgaaaaggagacacaggaacttccaacaaaacgaaaggct
caaaagcataatgatgaatcagttaaaccaccacctgttaaaaaacttcacatagttgat
gatgatgatgatgatgacgactttatcttgtctagttctaggaagaattcagttgatgtg
acttctaggaagaagttgaagagtgggtcaggtaggggaattgcacagaaacctgtagac
attgaagaaggtgatgaggatgatgataaggatattgatactcatcttaagtctggtgga
ataggttcatcagcagaaccagctagtggaagaggcagaggtagtggatggggttcattt
attaactttggagaaaggaaagatcctccacataaaggggaaaaggtagtccctgagggt
gctcccaattgtttagctggtttaacttttgtaattagtggaacacttgacagcctggag
cgtgaagaagctgaagatttgattaaacgccatggtggtcgtgtcactggatccatcagc
aagaaaacgaattatcttttatgtgatgaagatattgggggtcggaaatcttctaaagct
aaagagctaggcactgcctttctcactgaggatggattgtttgatatgatccgtgcatca
aatcctgcaaaagcacctgtacaagaaggatctaagaggccagtagtggataaggttgca
cctcttccaaagaaaagcccacagaaaatagaagcaaagaaagatagcattggcaactcc
ttggcagcagctgtatctggaaaaggcttgatctcagggttgtccccagctaagcataaa
actcaaaccgttgcaatgaatgctttgacatggacggaaaaatatagcccaaaggttctg
aaagatattattggaaatgagtcgctggttgatcggcttcggaagtggttggcaaattgg
aacgctcaatttcttgatactggaaataagaaaaagagcaaaagacaccaatcaaaaaaa
gaagaggagaagggcaaaaaacaaattaattctgctgccaaaaaagcggtgctaataagt
ggaactcctggtataggaaaaactacctcagcaaaattggttagtcagatgctcggtttc
caagcaatagaggtaaatgctagtgacagtcgtgggaaggctgacaccagaattgagaaa
ggaattgctggaagcaatgcaaattctataaaggaacttgtcagcaatgaggccctaagt
gtcaacatggatcgatcaaagcatccaaaaactgtgctgattatggacgaggttgatggg
atgtctgctggagataggggtggaattgctgaccttattgctagcatcaagatttccaaa
attcctattatctgcatttgtaatgaccgatacagccagaaactaaaaagtcttgtgaac
tactgtttgcttctcgaatttaagaaacctgaggaatcgcagatgatggcaaagagatta
atggaagttgcaaatgcagaaggccttcaagttaatcagattgttcttaaggaacttgca
gaaagagtcaatggagatatgcgtatggcactaaaccaattgcaatatatgagcctctcc
atgtcagtcattaaatatgatgacattaggcagtgtcttcatagcggtgcaaaggaccaa
gacatttcacctttcactgctgttgacatcctgtttagatccaatgggaagttgaggatg
gatgagcagatcgacctgagcatgagtgatcctgatctagtccctcttcttattcaggaa
aattatattaattgtaggccaagttcggttggtaaggatgacaatggaatcaaatgtatg
agcttgattgctcgtgctgctgaatctattggtgatggggatattatcaatgtacagatt
cgacgatatagacagtggcagctctctcaaattggttcccttgcatcgtgtataattcct
gctgcactgttgcatgagcagatggaaacacgtaaacagagaaagaataattttattaga
tttggaggatggctgggaaagaactcaacaacgggaaaaaatttgaggcttttggaggat
tttcatgttcgtcttcttgcttctcgtgaatgtagtttggggagggaaaccctgcgagta
gaataccttactctccttacacttgttctgaaacgattgactgagccactgcaggagctg
cctaaggatggagctgctcaaaaatttgttgagtttatgaatatgtactcaataagttgg
gaggatttcgatacaattgtggagctatcaaaatttcaggggcatccaaatccgctggat
ggaaaacagcgtgctgtgaaggctactctcaccaaagcttacaaagaaggaagaaaaaca
agaatggtacgagctgcagatttagtcaagcttcctggtgtgaaaaaagctcctaagaag
cggattgcagcaattttagagccatctgatgatggatttgttgatggtggtggtagcaca
ttggcagaaggtgaagaagacaattcttcagatatggatgagttggaaggccctgccaat
gttgagaagctacaaatggaacttcagagtttgaattcaaaaggaatgcaagtggagttc
gatatgaagggcacaggaaagtcaaagaaaacaccagttggcaaaggaaacggtggttct
ggaccttcggagaagaaaggtgcatggggttcagtggctggtgccaagagaaggagatga
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