Quercus lobata (valley oak): 115982254
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Entry
115982254 CDS
T07350
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115982254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qlo03041
]
115982254
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115982254
Spliceosome [BR:
qlo03041
]
Complex C
Other components
Step II factors
115982254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
Flavi_DEAD
nSTAND3
AAA_30
T2SSE
AAA_16
AAA_24
Sigma54_activ_2
AAA_7
Sigma54_activat
ATPase
ABC_tran
Motif
Other DBs
NCBI-GeneID:
115982254
NCBI-ProteinID:
XP_030960661
UniProt:
A0A7N2L9L0
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All DBs
Position
3:complement(54207633..54222633)
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AA seq
1283 aa
AA seq
DB search
MEKRGDDVEFIDVNKTMDTLEPEKASFGGLIVPGKDRLVYRAPERKSILGLDVLAIAKRA
ESKVEGGFKAPREKVTSVISSIEEEENSESSGLDEVGSNANSVTRNHTSRRYRETTGSIV
TQEEQVNDTSRTRHSSEHPDVPDTPSRSYHSVRSRSPRYDRDDRSSERRDVKDDTRSESR
RVKHRHSDDSKDNYYRREARGRYDQDYDGEYGRKRSRYEGSRRTPGRSDWDDGRWEWEDT
PRRDSHSHTSRRHQPSPSPMFMGTSPDARLVSPWLGGHTPSSTASAASPWDHVSPSPVPI
RASGSSNRSSNSRHGGKSHQLSFSRENSEAFEGGDSDKTDLSEEHKYEITESMRLEMEYN
SDRAWYDREEGNTMFDADSSSFYFGDDSSFQKKEAELAKRLVRRDGTKMTLAQTKKLSQR
TADNAQWEDRQLLRSGAVRGTEVQTEFDDEEERRVILLVHDTKPPFLDGRVVFTKQAEPI
MPIKDPTSDMAIISRKGSALVREIHEKQSMNKSRQRFWELAGSKLGDILGVEKTAEQVDA
DTADVGEDGEVDFKEDAKFAQHLKKGEAVSDFAKSKTLAQQRQYLPIYSVRDDLLQVIRE
NQVVIVVGETGSGKTTQLTQYLHEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMETELGD
KIGYAIRFEDVTGPNTIIKYMTDGVLLRETLKDSDLEKYRVIVMDEAHERSLNTDVLFGI
LKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEGA
VKQAMTIHITSPPGDILIFMTGQDEIEAACHALAERVEQLMSSAKKAVPKLMILPIYSQL
PADLQAKIFQKAEEGARKCIVATNIAETSLTVDGIFYVIDTGYSKMKVYNPRMGMDALQV
FPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLK
VENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGSLTGLGWKMVEFPLDPPLAKMLLMG
EQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAARERFFVPESDHLTLYNVYNQWKQHQ
YRGDWCNDNFLHVKGLRKAREVRSQLLDILKTLKIPLTSCWPDSDIVRKAICSAYFHNAA
RLKGVGEYVNCRNGMPCHLHPSSALYGMGCTPEYVVYHELILTTKEYMQCATAVEPQWLA
ELGPMFFSVKESDTSMLEHKKRQKEEKTAMEEEMENLRKVQAEAERDSKEKEREKRQKEQ
QQVSMPGLRQGSSTYLRPKKFGL
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atggagaaacgcggagatgatgttgaatttatagatgtgaacaagacaatggatacattg
gagcctgagaaggcgagcttcggaggattgattgttcctgggaaggatagactggtgtat
agagctccggagaggaaatcaattttaggcctagatgtccttgcgattgcaaaacgagct
gagtctaaggttgaaggtggattcaaggccccaagagaaaaagttacttctgttatttcg
tctatagaggaggaagagaattctgaatcctctggattagatgaagtaggaagtaatgca
aatagtgttacacgcaatcatactagtaggcgttatcgtgaaacaacaggaagtattgtg
actcaagaagaacaagtcaatgatacatctcgtactcgtcactctagtgaacatccagat
gttccagatacaccctcaagaagttaccatagcgttcggtctaggagtcctaggtatgat
agggatgaccgaagtagtgaaagaagagatgtgaaggatgacactagaagtgaaagcaga
agggtgaaacatagacacagtgatgatagtaaagacaattattatagaagagaagcacgt
ggtcgatatgatcaagactatgatggggaatatggaagaaagcgaagtagatatgaaggt
tcaaggaggacacctggcagatccgactgggatgatgggagatgggaatgggaagataca
ccacgccgggatagtcactctcataccagtaggcgtcatcaaccttcaccatccccaatg
tttatggggacttcacctgatgcacgactagtttcaccatggttgggtggccatacgcct
tcttctactgcttctgctgcttctccctgggaccatgtctctccctctccagttccaatt
cgtgcttctggatcctccaatagatcttcaaactctagacatggtgggaagtcccatcaa
ctttctttttctagggaaaattcagaagcatttgagggcggagactcagataaaactgat
ttgtctgaagaacacaagtatgagattactgaaagtatgcgcctagagatggaatacaat
tctgaccgtgcatggtatgacagagaagaaggtaatacaatgtttgatgcagacagctcg
tcattttattttggagatgattcttctttccagaagaaagaagcagaattggccaaaaga
ctggtgcgaagagatggaacaaagatgacacttgctcagaccaaaaagttgtctcagcgc
actgctgataatgctcagtgggaagaccgccaactattgagatctggagctgttagaggg
actgaggtgcagaccgagtttgatgatgaggaagaacgcagagttattcttcttgtacat
gatacaaaacctcctttcctagatgggagagttgtttttactaaacaagcagagccaata
atgccaataaaagacccaacatcagatatggctataatttcacgcaaaggatctgctctg
gttagagaaatccacgagaaacaaagtatgaataagtcacgccaacgtttttgggagctt
gcaggctcaaaacttggtgatattcttggtgttgaaaaaacagcagaacaggttgatgct
gatactgctgatgtgggtgaagatggtgaagttgattttaaggaagatgcaaagtttgca
cagcatttgaagaagggggaagcagtaagtgattttgcaaagtcaaaaaccttagcacag
cagcgacagtatctgccaatatattcagtgcgagatgatttattgcaggtaatacgtgaa
aatcaggtggtgattgtcgttggagagactggttcgggaaagacgactcaactgacacag
tatctgcatgaagatggctacaccacaaatggtatagtgggatgcacccaaccaaggcgt
gttgcagctatgagtgtcgcaaaaagagttagcgaagagatggagactgaacttggtgac
aaaattggttatgccattcgttttgaggatgtgactgggccaaacaccataattaagtac
atgacggatggagtactcttgcgtgaaacactcaaagattctgatcttgaaaaatatcgt
gtcattgtgatggatgaagcccatgagaggtcactaaacacagatgtgctgtttgggata
ttgaaaaaagtggttgctcaacgtcgtgattttaagcttatagtgacatctgcaactttg
aatgcacaaaaattttcaaatttctttggaagtgtaccaattttccacatccctggtagg
acatttcctgttaataccctgtacagtaaaactccatgcgaagattatgttgaaggtgca
gtgaagcaggccatgaccatccacatcacaagccctccaggtgacattctcattttcatg
actggccaagatgagattgaggcagcctgtcatgcccttgcagagcgtgtggaacagctc
atgtcctctgcaaagaaagcggttcctaaactcatgatactccccatatattcacagctg
cctgctgacttgcaagcaaagatattccagaaagctgaagaaggggcccggaaatgcatt
gtggcaactaacattgctgagacatctttaaccgtagatggaattttttatgtcattgac
acaggctatagtaagatgaaagtgtacaaccctaggatgggtatggacgctctccaagta
ttccctgtcagccgtgctgctgctgaccaacgtgctggacgtgctggtagaactgggcct
gggacatgttatcggctatatacagagagtgcatacctaaatgaaatgttgcctagtcct
gtgcctgagatccaaaggaccaaccttggcaatgtggttttgttgctcaaatctcttaaa
gttgagaacttgctggattttgatttcatggacccacctccacaggataatattcttaat
tctatgtaccagttgtgggtcttaggtgctcttaacaatgttgggagcttaactggtctt
ggctggaaaatggtggagtttccattggaccccccacttgccaagatgctgttgatgggt
gaacagctaggatgcttggatgaggtattgacaattgtttcaatgctttcggtaccatca
gtattcttccggcctaaagatagggcagaggagagtgatgctgcacgtgaaagattcttt
gtgccggaatctgaccacttaacgctttataatgtttacaatcaatggaaacaacaccag
tatcgtggagactggtgtaacgacaactttttgcatgttaaagggttacggaaggctaga
gaagtgaggtcccagttgttggatattctcaagacactaaaaatccctttgacatcttgt
tggcctgattcagacatcgtgaggaaagccatctgttctgcatatttccataacgcagca
agattaaagggtgtgggggagtatgtcaattgcaggaatgggatgccttgccatttacat
ccgagcagtgctctctatggtatgggttgcactccagagtatgtggtctaccatgagttg
attttgacaaccaaggagtatatgcaatgtgctacagcagttgaaccccagtggctggct
gagctgggaccgatgttcttttcggtcaaggagtcagatacatcgatgttagagcataaa
aagaggcagaaggaagaaaaaacagccatggaggaggaaatggagaatttgaggaaggtg
caagcagaagctgagagagatagcaaggagaaggagcgggaaaagaggcaaaaggagcag
caacaagtctcgatgccaggtctgcggcagggctcttctacctatttgaggccaaagaag
tttgggttgtaa
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integrated database retrieval system
