Quercus lobata (valley oak): 115983353
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Entry
115983353 CDS
T07350
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115983353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115983353
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
115983353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Ice_nucleation
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
115983353
NCBI-ProteinID:
XP_030961855
UniProt:
A0A7N2LFN1
LinkDB
All DBs
Position
4:26512421..26520370
Genome browser
AA seq
1921 aa
AA seq
DB search
MDFYSCIARRTRSGTDLYFRTISQGSSSARRASSRGSDSRTNVEDRASGCGSASNSEVRK
SGRKRKKVTFYEPDDEDDCLFVGEGESREEQGDSVLFGSQLRTEKAKKGRFGSSVDGPGG
LFGEKDMEDGDDDKVEVIVIDESDGSSSEDDFYGYENSGDEIRSEPDSAAAAFGDENVIN
VDGEPFEMKKGAYENSGDEIRSEPYSAAAFGGENFINVDKEPFEMREGGYENSGDDIRSE
PCSAAVFGGEHVINVDGEPFEKKKSAYENAGDEIRYEPYLAAAFGGENFIIVDKEPFEMK
EGAYENSGGEIRSEPDSVAVAFGGENVINVDVEPFEMKEGAYENSGDEIRSEPDLAAAFG
GEKVINVDGEPFEMKKSAYENAGDEIRYEPYLAAAFCGENFIIVDKEPFEMKGGLFENPG
GEIRSEPDSVKAAFGSENVINVDAVPFEKKEDAYENSGDDIRPEPDSAAAFGGEKVINVG
EEPFDMKEAVESIDLTKDDENDDFDDFELIGRAGIGSRLWKSDPAGLESFGLESPMVSKW
IFGESSCVTPVEKKFESLRDKGKNVLEKDGGNDQDVSGVSPMPSKVGESSFESFDLTSPV
VSKGKANGNNREKKEFESLGNDKGKKAMESDGGNGQDVSGVSPMPSKVGESPLEVSESES
SSEKDSDIFSSSSSSDDDDSQDEDYKVNKVDYTTSEDEGLSFDDDDDELSDFVEENVADS
RNEKEASVCKEDEKKSNQLEPPLKKRKFSSRENEAEVVTDNKDMGAPIVEEEKDKGVAMD
ECVEEREKEHEVENQASTFYEKNEETGDEGAAMGECMEEVEKEVEAENEASPFCEKNEET
GDDSATKEECSEKEVEAEIDASSICEKNVETRDDGFTDEVCGNKEEEEEIEADYEASSSC
EKISETRYDGGTVEERGKEDEGAKERCREKEEEKEVETSSIGENNGETRDDGATKEMYWE
RKATKRVGVPFFSGRERKATRVGMPVFSSKETEKKQRLVTRSSVKRIKIPGEKSNLSGTG
RPTAASRENIKKVYGSTATAASRESLKKVYGSTKTAKEVEEGDSRNDEFIVGRAEKAQKS
LHSSTKFSEESKKQEWQDEQEEEEKGKGDKIGPEGRDFSCKRKGAGGLKDTNIFRLLLDS
ITEKGEAITDHLVSSDEETTNEEDTTNRPKAADAQPLPLKFTFGVEEPETLEKSESEKEL
DMLWAEMDFALKSLEIGSSVVEDEEMNEVENGANLETLCKHDLILDEQIGIKCRFCSFIM
LEIRYVLPPMAKFASEGLGRKSSYSGENVSMFDGVQLQDLSSNPGDSFNQTKGTIWDIIP
NIKSSMYPHQQEGFEFIWKNLAGTTEVEKLKSSDPDNVGGCIISHAPGTGKTRLTIVFLQ
TYLEMFPKCRPVIIAPASLLLTWEEEFKKWNVGVPFHNLNSLEFSGKESAVVVKFLDRSR
HQSQNKNDIRMVKLFSWCKDKSILGVSYSLYEKLAGEKFRKDDGTKKRSKVKRETETEDL
RNFLLDLPGLLVLDEGHTPRNQRSSIWKVLCELQTKKRIILSGTPFQNNFLELYNTLCLV
RPGFADTTPSNLKKLCQRRLMREKRVKGEVLDSTSNSTGSLADEEIKQFKALMAPFVHVH
KGSILQKNLPGLRDCVVVLNPPDLQKRLLEGIRGTSNTFEFEHRLALASVHPSLFQCMSL
TKKEESILDQDWLERQRLNPNEGVKTRFLMEFVRLCDTVDEKILVFSQFIDPLCLIMDQL
NSLLNWCEGRELLYMHGKLDQKTRQFMINKFNDPNSEAKVLLASTKACSEGINLVGASRV
VLLDVVWNPSVERQAISRAYRIGQKKVVYTYHLITRGTTECDKYCKQAEKDRLSELVFSS
EMVVSSTNKENDKQKSPAVVSDDKVLDEMIRHDKLKDMFEKIIYQPKESDLVESFGSMVL
P
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atggatttctacagttgcattgctagaagaactcgttctgggacagacttgtacttcaga
acaatctctcagggtagttccagtgcgagaagagcttcgtcaagagggagtgattctcgg
accaatgtggaagatagagcatctgggtgtggatcagcatcgaattcagaggtaagaaag
agtggaaggaagagaaaaaaagttactttttatgaacccgatgatgaggatgattgtctg
tttgttggtgagggagagagtagggaggaacagggggattctgttttgtttggttctcaa
ttgaggactgagaaagccaaaaaaggtagatttgggtctagtgtagatggcccaggtgga
ttgtttggagagaaagatatggaggatggggatgatgataaagtagaggttattgttata
gatgaaagtgatggtagtagcagtgaggatgacttttatggttatgagaattcaggagat
gagataaggtctgagcctgattcagcagcggcggcctttggtgatgaaaacgttatcaat
gttgatggggagccatttgagatgaaaaaaggagcatatgagaattcaggagatgagata
aggtctgagccttactccgcggcggcttttggtggtgaaaactttatcaacgttgataag
gaaccatttgagatgagagaaggtggttatgagaattcaggagatgatataaggtctgag
ccttgttcggcggcggtgtttggtggtgaacacgttatcaatgttgatggggaaccattt
gagaagaaaaaaagtgcttatgagaatgcaggagatgagataaggtatgagccttatttg
gcagcagcttttggtggtgaaaactttatcattgttgataaggaaccatttgagatgaaa
gagggtgcttatgagaattcaggaggtgagataaggtctgagcctgattcagtggcagtg
gcttttggtggtgaaaacgttatcaatgttgatgttgaaccatttgagatgaaagaaggt
gcttatgagaattccggagatgagataaggtctgagcctgatttggcagcggcttttgga
ggtgaaaaggttatcaatgttgatggggaaccatttgagatgaaaaaaagtgcttatgag
aatgctggtgatgagataaggtatgagccttatttggcagcggctttttgtggtgaaaac
tttatcattgttgataaggaaccatttgagatgaaaggaggtcttttcgagaatccagga
ggtgagataaggtctgagcctgattcagtgaaggcggcttttggcagtgaaaacgttatc
aatgttgatgctgtaccatttgagaagaaagaagatgcgtatgagaattcaggagatgat
ataaggcctgaacctgattctgcggcagcttttggtggtgaaaaggttatcaatgttggt
gaggaaccatttgatatgaaagaagctgtcgaaagtattgatcttaccaaagatgatgag
aatgatgactttgatgactttgagttaattggaagagctggaattggtagcaggctgtgg
aaatcagatcctgctggattggaaagctttggtttggagagtccgatggtgtccaaatgg
atttttggtgaaagtagttgtgtgactcccgttgaaaagaagtttgaatcattgcgtgat
aaagggaagaatgtgttggaaaaagatggtggaaatgaccaagatgtttcaggggtgtct
ccaatgccttcaaaagttggtgagagtagttttgaaagctttgatttgacgagtccagta
gtgtccaaaggtaaagctaatggtaataatcgtgaaaaaaaggagtttgaatcactgggg
aatgataaagggaaaaaggcgatggagagtgatggtgggaatggccaagatgtttcagga
gtgtctccaatgccttcaaaagttggggagagtccgttggaagtcagtgagagtgagagt
agttctgaaaaggattctgatattttttcgtcttcgagtagtagcgatgatgatgatagt
caagatgaggattataaggtgaataaggtggattacacaactagtgaggatgagggtttg
tcatttgatgatgatgatgatgaattatctgatttcgttgaagaaaatgttgctgacagt
aggaatgagaaggaagcaagtgtgtgtaaagaggatgagaagaaaagcaatcagcttgag
cctcctttgaagaaacgtaagttttctagtagggagaatgaggcagaggttgtgactgat
aacaaagacatgggtgctcccattgtagaggaggaaaaagataaaggtgttgcaatggac
gagtgcgtggaggagagggaaaaggagcacgaggtagagaatcaagccagcacattctat
gaaaagaatgaagaaactggagatgaaggtgctgcaatgggcgagtgcatggaggaagtg
gaaaaggaggttgaggcagagaatgaagccagcccattttgtgaaaagaatgaagaaact
ggtgatgatagtgccacaaaggaagagtgcagcgagaaggaggttgaggctgagattgat
gccagctcaatttgtgaaaagaatgttgaaactagagatgatggcttcaccgatgaagtt
tgtgggaacaaggaagaggaggaggagattgaggcagattacgaagccagctcaagttgt
gaaaagatttctgaaactagatatgatggtggcacagtggaagagcgcggaaaggaggat
gagggtgcgaaggaaaggtgcagggagaaggaagaggaaaaggaggttgagaccagctca
attggtgaaaataatggtgaaactagagacgatggtgccacaaaggaaatgtactgggaa
aggaaagctactaagagggttggtgtgccttttttttctggtagggaaaggaaagctaca
agggttggtatgcctgttttttctagtaaggaaactgagaagaagcagcggttagtcact
cggtcttcagtgaagaggattaaaattcctggtgagaaaagtaatttgtctggtactggc
cgtcccactgcagcatctagagagaacattaagaaagtatatggctcaacggccactgca
gcatctagggagagccttaagaaagtatatggttcaactaagactgctaaggaggtggag
gagggtgattcaagaaatgatgaattcattgttggcagggcggagaaggcacaaaagtct
ctgcattcttcaactaaattctctgaggagagcaagaaacaggaatggcaagatgaacag
gaagaggaagagaaggggaagggggataaaataggtccagaaggtagagactttagttgt
aagagaaagggagctggtgggctgaaagatacgaatattttcagacttcttcttgattcc
attacagaaaaaggagaggctattacggatcatttagtgtcttctgatgaagagactact
aatgaagaagatactactaatagacctaaagctgcagatgcacagccacttcctctgaag
tttacttttggtgttgaagagcctgaaacattggagaaatcagaatctgaaaaagagttg
gatatgttgtgggctgagatggactttgctctcaagtcccttgaaattggttcctctgtg
gttgaggacgaggaaatgaatgaagtagaaaatggagcaaatttggaaaccctttgtaag
catgacttaatcctggatgagcaaattggaataaaatgcagattttgttccttcataatg
cttgagattagatatgtgttgccacctatggcaaagtttgcttccgaaggattgggcagg
aaaagttcatatagtggggagaatgtctcaatgtttgatggggttcaacttcaagatttg
agtagtaatcctggagactcattcaaccaaacaaaagggacaatatgggacatcatcccc
aatattaaaagtagcatgtatccacaccaacaggaaggttttgagttcatatggaagaac
ttggcaggaaccactgaagttgaaaagttgaagagttctgatcctgataatgttggtggt
tgcattatttcacatgcccctggaaccggtaaaacccggctaaccattgttttcctccag
acgtatttggaaatgttcccaaaatgccgcccagtaattattgctccggccagcctactt
ctcacttgggaggaagagtttaaaaaatggaacgttggagttccatttcacaacctgaac
agcctggagttctcaggaaaggagagtgcggttgttgtcaaatttctggacagaagtagg
caccaaagccaaaacaagaatgacattcgcatggtaaaattgttctcctggtgtaaggat
aagagcatactaggggttagctacagtttgtatgaaaagcttgctggagaaaaattcaga
aaggatgatggaaccaagaagagaagtaaggttaagagggaaacagaaactgaagatttg
aggaactttctgcttgacttgccaggcttgttagttcttgatgaaggtcacacacctaga
aatcaaaggagtagcatttggaaggttctctgtgaacttcaaaccaaaaagcggatcatc
ctctcagggactcctttccaaaacaatttcctcgagctctataatacattgtgcttagta
aggccaggatttgcagacacaaccccttcaaaccttaaaaaactctgccaaaggagactg
atgagagaaaaaagagtcaagggagaggtactagattccaccagcaattcaacaggcagt
cttgctgatgaggaaataaagcagttcaaagcacttatggcaccatttgttcatgtacac
aaaggtagcattcttcaaaagaatcttcctggactgagagattgtgtggtggttttgaat
ccaccggatttgcagaagcggctgctagagggcattcgaggtacctcaaacacatttgaa
tttgaacataggttagcgttggcctctgtccacccttctctgtttcagtgcatgtcttta
accaagaaagaagaatccatccttgaccaggattggttggaaaggcaaaggctaaatcct
aatgaaggcgttaaaaccagatttttaatggagtttgttcgactgtgtgatacggttgat
gaaaaaattctggtgttcagccaattcattgatccattatgtttgataatggaccaacta
aattcacttttaaattggtgtgaagggagggaattgctgtatatgcatggtaaactagat
caaaagactcgccaattcatgataaataaattcaatgatccaaacagtgaagcaaaagta
ttgctagcttcgacaaaggcatgttctgagggcatcaatttggtaggtgcttcaagggtt
gttctgcttgatgttgtttggaatccgtctgtagagaggcaagcaataagcagggcatat
agaattggccaaaagaaagtggtctatacttaccatctcatcacacgggggactacagaa
tgtgacaagtattgcaaacaggctgagaaagatcgtctatctgagttggtgttttcttct
gagatggtggtttcttctaccaacaaggaaaatgacaagcaaaagagtccggctgtagtt
tcagatgataaagtactggatgagatgatacggcatgataagctcaaagatatgtttgag
aagatcatctaccagccaaaggagtcagatttagttgaaagttttggttctatggttctt
ccatga
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