Quercus lobata (valley oak): 115983520
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Entry
115983520 CDS
T07350
Name
(RefSeq) probable RNA helicase SDE3 isoform X1
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115983520
03036 Chromosome and associated proteins [BR:
qlo03036
]
115983520
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
115983520
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115983520
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
115983520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MOV-10_beta-barrel
AAA_11
Motif
Other DBs
NCBI-GeneID:
115983520
NCBI-ProteinID:
XP_030962088
UniProt:
A0A7N2LKP3
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Position
4:79510276..79516078
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AA seq
677 aa
AA seq
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MSCFLEFLKCILCCEEDSYDDTYSRTRSRPFWLESGSERNGYSVCNSSPTPTTTTPLYRD
HYQILAKSSLPSASSPYYQTKVAIDSWISSSVTPQSSSSSKPSPSSSVPPQFSTNEVSHS
SKSSSPLPPAFSSRSIQSPSKQSAYSYLSQSSPKPPPSSSSSSPSSLKPPVPSSKAPSAS
SPTSYKPSQSSPSTSKQPPDFKPILHIAPNNVTDEERKTSYICEKGTAIYAVPEDIKSLI
KRDIVPEVLKQPLSPSTYKAYFAALLYAEDYYLDKWSDFQLKKVTLELEKAAVFKKSNKN
KYSKGSNEKDDKIFVAFDIDCIREKRPYLLSRDMVNARPSDKKVEPFQGFFYRVVRSNRV
LVEFGDDFHSQHHPNRKYDISFSFNRVCLKSAHQAIEAAFALDPLSHNLLFPECVSRKNI
LSPPALLDAYDKLNTNEFNSVRRILSFRGSPPYLLGGELVGTEVKRSVPGPKAPATARTG
LVVCEAVIELYKTFKESRILICAPTNHTCDELTISLREVIPDSDMFRANAAFREVKRVPV
DILLSCPIKDECFTCPPLAKLRKFKIILSTFVSSFRLYNEGIPAGHFSHIFLVDASSTIE
PEATIALANFANENTAVIVTGAPKDRPGWVRSDIAWNHGLEKSYFERLLEFRPYKTLNPM
FITEMVNFEGWSKDIYK
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgttttctagaattcttgaaatgtatcctttgttgcgaagaagacagttatgat
gacacttactctagaactagatctaggcctttttggctggaatctggttctgaaaggaat
ggctattcggtatgtaattcatctccaactccaacgaccacaaccccattgtaccgtgac
cactaccaaattttagcaaagtcgtcattgccaagtgcttcttcaccttattatcaaacc
aaagttgcaatagattcatggataagcagctcagtgacacctcaatcttcatcttcatct
aagccgagcccatcttcctctgtgccacctcaattttccactaatgaagtttcccacagt
tctaaaagttcaagtccattgccacctgcattttcttctagatcaattcaatctccatct
aaacaatctgcatattcctacctatcccaatcttcacctaaaccgcctccctcgtcttct
agttcatccccatcatcccttaaacctccagttccttcttctaaagcgccatcagcttct
tctccaacttcctataaaccatctcaatcttcaccatctacttctaagcaacctccagat
tttaagccaattctgcatatagctcccaataatgtaacagatgaagaaaggaagacaagt
tatatttgtgaaaagggtacagccatatatgctgttcctgaggatatcaaaagtctgatc
aagagagacattgtgcccgaagttctgaagcagcctttgtctccttcaacttataaggct
tattttgctgccctattatatgccgaggattactacttggacaaatggagtgacttccaa
ttgaagaaagtgacattggagttggagaaagcagcagtttttaaaaaatcaaacaagaat
aaatattccaaaggaagtaatgagaaggatgataaaatctttgtagcatttgacattgat
tgtattcgtgagaagcggccatatcttttatcaagggatatggtcaatgcacgaccttca
gataaaaaggttgagccatttcagggttttttctatcgtgtggtgagaagcaatcgtgta
ttagttgaatttggagatgattttcattcacagcatcatcctaatcgcaaatatgatatc
agcttctcattcaacagagtgtgtctaaaaagtgctcatcaagcaatagaagctgcattt
gcattagatcctttgtcccacaacctactctttcctgaatgcgtctctcggaagaacatc
cttagcccacctgctctgcttgatgcctatgataaactcaatacaaatgagttcaattca
gtacgccggattttaagctttcggggctcaccaccttatcttcttgggggcgagcttgtc
ggcactgaagtaaaaaggtctgtacctggaccaaaagcaccagcaactgcaagaactgga
ctggttgtttgtgaagcagtaattgaattatataaaacctttaaagagagtcggattctt
atatgtgcacctacaaatcacacatgtgatgagctgacaataagtttaagggaagtgatt
ccagactcagatatgtttcgagccaatgctgcatttcgtgaggtaaaaagggtacccgtt
gacattctgctttcatgtcctataaaagatgaatgttttacatgtcctccactagcaaaa
cttcgaaagttcaagataattctgtcaacttttgtgagtagctttcgactatacaacgaa
ggtatacctgctggacattttagtcatatttttctagtggatgcctcatcaaccatagag
ccagaagcaacaatagctttagctaattttgctaatgagaatacagccgtcatagttact
ggtgcacccaaagaccgtccaggttgggtccgctctgacatcgcttggaatcatggattg
gagaagtcatattttgaaagacttcttgaattcaggccatataaaaccctcaatccaatg
ttcatcacagagatggtcaactttgagggatggtcaaaggacatctataaatag
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