KEGG   Quercus lobata (valley oak): 115983802
Entry
115983802         CDS       T07350                                 
Name
(RefSeq) general transcription factor IIH subunit 2
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03022  Basal transcription factors
qlo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    115983802
  09124 Replication and repair
   03420 Nucleotide excision repair
    115983802
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:qlo03021]
    115983802
   03400 DNA repair and recombination proteins [BR:qlo03400]
    115983802
Transcription machinery [BR:qlo03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     115983802
DNA repair and recombination proteins [BR:qlo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     115983802
SSDB
Motif
Pfam: Ssl1 C1_4 VWA_2 IBR
Other DBs
NCBI-GeneID: 115983802
NCBI-ProteinID: XP_030962464
LinkDB
Position
1:23233491..23238587
AA seq 423 aa
MNNGNGRRLNGETEEDDDDEGSEGDLDAWERTYADERSWESLQEDESGLLRPVDNKTLYH
AQYRRRIRSLSSQATTSRIQKGLIRYLYIVVDLSRAAAEMDYRPSRMAVVAKHVEAFIRE
FFDQNPLSQLGLVTIKDGIAHCLTDLGGSPESHVKALMGKLECSGESSLQNALDLVHGYL
NQIPSYGHREVLILYSALSTCDPGDILETIQKCKKSKMRCSVIGLSAEIFICKHLCQETG
GSYSVAMDESHFKELILEHAPPPPAIAEFAIANLIKMGFPQRAAESSIAICSCHKEAKVG
GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIVPFDEVSSSVLNDPHNRL
PRSCFGCQQSLPNPGNKPSLRVACPKCKQHFCLDCDIYIHESLHNCPGCESFRHSKTPIA
TEE
NT seq 1272 nt   +upstreamnt  +downstreamnt
atgaacaatggaaatggaagacgattgaatggggagacagaggaagatgatgacgacgaa
ggaagtgagggagaccttgatgcttgggagaggacttatgcggatgagaggtcatgggag
tctctgcaagaagatgagtctgggcttctccgccccgtggataacaagaccctttaccat
gcacagtatcgccggcgcattcgctctctctcctcccaggcaactacttctcggatccag
aagggtctcattcgctatctctacattgttgttgacctctcaagggcagctgcagagatg
gattatcgaccaagccgaatggctgtggttgcaaaacatgttgaggcttttattagggag
ttctttgaccagaatcctcttagtcagcttggtcttgtgactataaaagatggaattgct
cattgcttaacagatcttggtggcagtcctgagtcccatgttaaagctttgatgggtaaa
ctggagtgctccggtgaatcctccctacagaatgccctggatcttgttcatgggtatcta
aatcagattccatcatatggtcatcgagaagttctcatcttatattctgctcttagtact
tgtgatccaggagatatattggagactatccagaaatgcaagaagtcaaaaatgaggtgt
tcagtcattggtctctctgcagaaatttttatatgcaaacatctctgccaagaaactggt
ggctcgtactctgttgccatggatgagtcccacttcaaagagttaatactggaacatgct
cccccacctccagccatagcagaatttgccattgctaatttgataaagatgggtttccca
caaagagcagcagagagttctatagcaatttgttcgtgtcacaaggaggctaaggttgga
gggggttacacttgtccaagatgcaaagcacgtgtatgtgaattacctactgaatgtcgt
atatgtgggttgacacttatttcttcaccccatttggcaaggtcatatcatcatctcttt
ccgatagtaccatttgatgaggtgtcttcatcagttctgaatgatccacataacagatta
ccaagatcttgttttggctgccaacaaagtcttccaaatcctggaaacaaacctagcctt
cgtgtcgcttgcccaaaatgcaaacagcacttctgcctcgattgtgacatctatattcat
gagagcttgcataattgccccggttgtgagagcttcaggcattcgaagacccccattgct
actgaagaatga

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