Quercus lobata (valley oak): 115983919
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Entry
115983919 CDS
T07350
Name
(RefSeq) uncharacterized protein LOC115983919
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115983919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115983919
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115983919
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
115983919
Messenger RNA biogenesis [BR:
qlo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
115983919
DNA repair and recombination proteins [BR:
qlo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
115983919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
RecQ_Zn_bind
HRDC
ResIII
DUF433
HAD_2
Motif
Other DBs
NCBI-GeneID:
115983919
NCBI-ProteinID:
XP_030962647
UniProt:
A0A7N2KNN7
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Position
1:23423455..23436610
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AA seq
921 aa
AA seq
DB search
MESILKKYFGYSTFRDYQKTVIEKILEKKDCLVVMATGSGKSLCYQVPPLVVGRTGIVVS
PLISLMQDQVMTLKQRGIRAEYLGSAQTDTSVQNKAENGQFDILYMTPEKACLIPASFWS
NLLKIGISLFAVDEAHCISEWGHDFRVEYKQLDKLRDILLDVPFVGLTATATEKVRIDVM
SSLKMKDPYVAVGSFDRTNLFYGVKSFNRGQLFIDELVREISKFVTGVDSTIIYCTTIKD
VEQIFKSLQEAGIKVGIYHGQMDNKARQESHRLFIRDELHVMVATIAFGMGIDKPNIRQV
IHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKADFYCGEAQTENQRRAVMESL
MAAQRYCLATTCRRQLLLGHFGEKSSAAGCGNCDNCLTSKKERDLSREAFLLMACIISCG
GKWGLNMPVDILRGSRSKKILNAEFDKLPLHGLGKEYSSNWWKALAHQLISNGYLMETVA
DVYVTVSVSSKGKQFLSSARPDYQPPLFLPVTSEMEDDGENKSASREVEDFKSFATLKRE
GFSEVEAQLYQMLLEERLKLARSIGTAPYAICGDETIKIIALTRPSTKARLANIDGVNQH
LLVKHGDHLLQIIRNLSQGLNLSLGGEASLQTSTTTKTTVTNQVNSLTNKQEKLSPAKCE
AWRMWHEDGFSIQKIANFPTRPAPIKEQTVLNYLLDAAREGFQFDWTRFCDEVGLTREIF
LAIQGAILKVGTTEKLRSIKDELPEAISYEHIKTVLAMQNLGISPELILPSNHNTLNADQ
LPNNVSEYSLISTSTCHMEGPCEVETSVKNSIGRCSFGKIEEAASVPSTGGQGPKLSLVH
DEDTPLTKRQKVSELDKGSLIPLEATERSIVEWLKNYAEGVTLSEILEHFNGLKEESVLD
LLSCLEGDFLIYKKNNMYRVM
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgattctcaagaaatattttgggtattctactttccgagactatcagaagacg
gttattgagaagattctagagaaaaaggactgcttggtggtcatggccactggcagcggc
aagtccctctgctatcaggtacctcctttggttgtgggaaggaccggcatagtggtcagc
cctctcatatctttaatgcaagatcaggtaatgactttgaaacaacggggcattagagca
gagtaccttggaagtgctcaaaccgataccagtgtccaaaacaaagctgagaatggtcaa
tttgatattttgtacatgactccagagaaggcgtgcttgattcctgccagcttctggtca
aatttacttaagattggaatttctttgtttgctgttgatgaagcacattgcatatcagag
tggggccatgatttcagggtggaatacaagcaattagacaagctacgtgatattctctta
gatgttccatttgttggactaactgcaactgctactgaaaaggttcggattgatgtgatg
agttccctgaagatgaaagatccctatgttgcagttggttcatttgatcgtacaaatctt
ttctacggtgtcaagtcctttaatcgaggtcaactatttattgacgagcttgtgcgagaa
atttcaaagtttgtaactggtgttgattcaactattatctactgcacaacaattaaagat
gttgagcagatattcaagtcacttcaggaggctggaattaaggttggaatctatcatggt
caaatggataacaaagctcgccaggagtcccacagattatttatacgagatgaattgcat
gtcatggttgccactatagcttttggcatgggtattgataagccaaacataagacaggtg
atacactatggttgcccaaagagtctagaatcctattatcaggaaagtgggagatgtggt
agagatgggatagcttctgtctgctggctttattatacaagaagtgactttgcaaaggct
gatttctactgtggagaagcccaaacggaaaatcaaagaagagctgttatggagtcattg
atggctgcacaacgttattgtttggcaacaacttgcagaagacagttactgcttggccac
tttggagaaaaatcttcagctgctggatgtgggaattgtgataactgccttacctcaaag
aaggagcgtgatttgtctagagaagcatttcttctaatggcttgcatcatatcatgtggg
ggtaaatggggcctgaatatgcctgtagacattcttcgcggttctcgatcaaaaaaaatt
cttaatgctgagttcgacaagcttccacttcatggacttgggaaagagtactcatcaaat
tggtggaaagcactagctcaccaattaatttctaatggttacctgatggagactgtagct
gatgtatatgtaactgtaagtgtcagttcaaaaggaaagcagtttcttagttctgctaga
cctgattatcaaccacccctatttttgccggtgactagtgaaatggaagatgatggggaa
aataaaagtgcatcacgcgaagttgaagacttcaaaagttttgctactttgaaacgtgag
ggattttcagaggttgaggcacaactgtaccaaatgcttttggaagagagactgaagctt
gcaagaagcattggaactgcaccatatgctatatgtggtgatgaaacaatcaaaataatt
gcactgacaaggccatctaccaaagccaggcttgcaaacattgatggtgttaaccaacac
ctactagtgaaacatggagatcatttacttcagattattaggaatctatcgcaaggacta
aatctttcattgggtggggaagcaagcctacagacttctacaacaaccaagactactgtt
acaaatcaagtgaattcgttaaccaacaaacaggagaagctttcgccggcaaaatgtgaa
gcttggagaatgtggcatgaagacggtttctctattcagaaaattgctaacttccctact
agaccggctcctatcaaagaacaaactgttttaaattatctcctagatgctgcccgggaa
ggatttcaatttgattggaccagattctgtgatgaagtaggactaacacgtgaaatattc
ttagccattcagggtgccattttaaaggttggcaccacagagaagttgaggagcattaaa
gatgaattacctgaagctataagttatgaacacatcaagactgttctggcaatgcaaaac
ctagggatctctccagaactaattctgcccagcaaccacaatacattaaatgccgatcaa
cttcccaacaacgtgtcagagtattcactgatttccaccagtacatgccacatggaagga
ccttgtgaagttgaaacctcagtcaagaattcaattggtcgttgtagctttgggaaaatt
gaagaagcagcttctgttccctccactggtggtcaggggccaaagctatccctagtccat
gatgaggatacacccttaacaaaacgccaaaaagtcagtgaactagataaaggaagtttg
atcccattggaggcaacagagcgttccattgtagaatggcttaagaactatgctgaaggg
gttactctgtctgaaattctggagcacttcaatggattgaaagaagaatctgtgcttgat
ttactaagttgccttgaaggtgactttttgatatataagaagaacaatatgtacagggtt
atgtaa
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