KEGG   Quercus lobata (valley oak): 115985382
Entry
115985382         CDS       T07350                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    115985382
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:qlo03019]
    115985382
Messenger RNA biogenesis [BR:qlo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     115985382
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     115985382
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 115985382
NCBI-ProteinID: XP_030964184
LinkDB
Position
4:complement(48954127..48954588)
AA seq 153 aa
MSGASIEDVYLPPSLASYLDKKAVLQLRDDRKLIGVLRSFDQFANVVMEGAYERIIVGDH
YCDLQLGLYVVRGENVVLTGELDLEREELPQHMTRVSEAEITRAQKAEREVVQRSIRKRL
EFLDFDKLRVASSYTCSHAQSHPQFCSFSPIVL
NT seq 462 nt   +upstreamnt  +downstreamnt
atgtctggggcaagcatagaagatgtctacctccctccttctcttgccagctatcttgac
aagaaggcggttcttcagctccgagatgatcgaaaattgattggtgtacttcgctctttt
gatcagttcgccaatgttgttatggaaggtgcgtatgagagaattattgttggtgatcat
tattgtgacctgcagttgggtctgtatgtggttcgtggagagaatgttgttttaactggc
gagctggatttggagagagaggaacttccccaacacatgactcgtgtttcagaagcagaa
attactagggcacagaaagcagagagggaggttgttcaaagatccatcagaaaaaggttg
gaatttctggattttgacaagttaagagttgctagttcatacacctgttcacatgctcaa
tctcatccacaattttgtagcttctcaccaatagttttgtaa

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