Quercus lobata (valley oak): 115985382
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Entry
115985382 CDS
T07350
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115985382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115985382
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115985382
mRNA degradation factors
5'-3' decay
Lsm complex
115985382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
115985382
NCBI-ProteinID:
XP_030964184
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Position
4:complement(48954127..48954588)
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AA seq
153 aa
AA seq
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MSGASIEDVYLPPSLASYLDKKAVLQLRDDRKLIGVLRSFDQFANVVMEGAYERIIVGDH
YCDLQLGLYVVRGENVVLTGELDLEREELPQHMTRVSEAEITRAQKAEREVVQRSIRKRL
EFLDFDKLRVASSYTCSHAQSHPQFCSFSPIVL
NT seq
462 nt
NT seq
+upstream
nt +downstream
nt
atgtctggggcaagcatagaagatgtctacctccctccttctcttgccagctatcttgac
aagaaggcggttcttcagctccgagatgatcgaaaattgattggtgtacttcgctctttt
gatcagttcgccaatgttgttatggaaggtgcgtatgagagaattattgttggtgatcat
tattgtgacctgcagttgggtctgtatgtggttcgtggagagaatgttgttttaactggc
gagctggatttggagagagaggaacttccccaacacatgactcgtgtttcagaagcagaa
attactagggcacagaaagcagagagggaggttgttcaaagatccatcagaaaaaggttg
gaatttctggattttgacaagttaagagttgctagttcatacacctgttcacatgctcaa
tctcatccacaattttgtagcttctcaccaatagttttgtaa
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