Quercus lobata (valley oak): 115985511
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Entry
115985511 CDS
T07350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115985511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115985511
03012 Translation factors [BR:
qlo03012
]
115985511
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115985511
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115985511
Translation factors [BR:
qlo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
115985511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
AAA_16
Myosin_head
PhoH
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
115985511
NCBI-ProteinID:
XP_030964309
LinkDB
All DBs
Position
4:49885990..49914257
Genome browser
AA seq
1157 aa
AA seq
DB search
MQNPKAVVGLLFGYAKSISISNNTHNQSPHRPLLNLLLLLPFPPPSSSPHSSSVSNARYF
FSNRGFCGYAAEQFSDDEYDCDFDNNKASSSVVNIDEWKWKLSMLLRSEKDQEIVSRDKR
DRRDYEQISNLAKRMGLYSELYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVE
GLLQEHLDRVMLNSGKENDGSDDAKPIDQVKDVNLDENTDSFVDGSVMEKVLQRRSLRMR
NMQRTWRESPEGKKMLDFRRSLPAFKERERLLQAIAQNQVIVISGETGCGKTTQLPQYIL
ESEIESGRGAFCSIICTQPRRISAMAVAERVSAERGEPLGDTVGYKVRLEGMKGKNTHLL
FCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSAT
LNAELFSSYFGGAPTFHIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQDKMWKTQK
QLVPRKRKSQITALVEDALNKSSFEKYSSRTRDSLACWMPECIGFNLIEAVLCHICRKER
PGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKPPPNVRK
IVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRV
LPGECFHLYPNCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGNFLSSALQPPKPLA
VQNAVDFLKMIGALDEKESLTNLGKFLSMLPVDPKLGKMLIMGAVFRCFDPVLTVVSGLS
VRDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSA
QTLQAIHSLRKQFSFILKDAGLVDADASINNRLSHNQSLVRAIICSGLFPGIASVVHRET
SMSFKTMDDGQVLLYANSVNAHYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILMLFGG
ALSQGVQAGHLKMLDGYVDFFIDPSMAECYLKLKEELEIHIQKKLEDPNLDIHKEGKYLM
LAIQELVSGDQCEGRFVFGRENKKPRESNENRFTKDGTNPKSLLQTLLMRAGHSPPKYKT
KHLKTNEFRALVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSDNSRDGDDHSPPDV
TDNMLKLLGKRRRSKGR
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatccaaaagcagtggtgggtctcctttttggatacgccaagtcaatctcaatc
tccaacaacactcacaatcaaagcccccaccgccccttgcttaatctccttctactcctc
cctttccctcctccttcttcttctcctcattcttcttccgtatccaatgccagatacttc
ttctccaaccgaggtttctgcggctacgccgcggaacagttctctgacgacgagtacgac
tgcgatttcgacaacaataaggcatcatcttcggtggtcaacatagatgagtggaaatgg
aagctcagcatgctgttgcgtagtgaaaaggaccaagagattgtatccagagataagaga
gataggagagactatgaacaaatctctaatctagccaaaaggatgggactttacagtgaa
ctgtatggaaaagtggttgttgcaagcaaggttcctcttcctaattacaggccagatttg
gatgataagcgtccgcaaagagaggtggtaatcccgctaagcttgcaaaggagggttgag
ggtttacttcaggagcaccttgatcgagtcatgttaaattctggaaaggaaaatgatggt
tcagatgatgctaaacccattgatcaggtcaaagatgtgaatctggatgagaacactgat
tcttttgtagatgggtccgttatggaaaaggttcttcagagaaggagtttgcgaatgcga
aatatgcaaagaacttggcgggaatcacctgaaggtaagaagatgctggacttccgaaga
tctctaccggcattcaaggagagagaaaggctgctccaagcaatagcacaaaatcaggtg
atagtaatatctggagagactggatgcggtaagaccactcagcttccccaatatatatta
gagtcagaaatagaatctggtcgtggagcattctgtagcataatctgtacccagcctcga
agaatatctgccatggctgttgcagaaagagtgtctgcagagagaggagagcctcttggg
gatacagttggctataaagttcgattagagggaatgaaaggaaaaaacacccatctgctt
ttttgtaccagtggtattttacttcggcggctgctgagtgatcgcaatctgaatggtata
acccatgtttttgttgatgaaattcatgagcgaggcatgaatgaagacttcctattaatt
gtcttgaaggatcttcttccacgccgtcgagatttgagattggttttaatgagtgccact
ctaaatgctgagcttttctccagctactttggcggagcaccaacatttcacattcctggc
tttacatatccagtgagagcacactttttagaagatgttctggaaatgacaggatataag
ttgacctctttcaaccaaattgatgattatggccaagacaaaatgtggaaaacacagaag
cagctagtgccacggaaaaggaaaagccagattactgcccttgttgaggatgctcttaac
aaatcaagctttgagaagtatagctccaggacacgtgattctctagcatgttggatgcct
gaatgcattggatttaatcttattgaggctgttttgtgtcatatctgtcgaaaggaaaga
ccaggtgcggtcttagtattcatgactggttgggaggatattagctgtttgagagatcaa
cttaaagctcatcccctactaggagatcctaaccgggtgctgcttctaacatgccatgga
tcgatggcaacatctgaacagaaacttatatttgagaaaccaccaccaaatgttcgtaaa
atagttcttgctacaaatatggcagaggcaagtataacaatcaatgatgtagtttttgtg
gtagattgtggaaaagcaaaagagactacctatgatgctttgaataatacaccttgtctg
ctaccttcttggatatcacaagcatctgctcgtcaaagaaggggtagggcaggacgtgtg
ctacctggtgaatgtttccacctgtaccccaattgtgtttatgaagctttctccgaatat
cagcttcctgaacttttgagaactcctttgaactctctttgcttgcaaattaaaagtttg
caagttgaaagtataggaaatttcttgtcttcagctctgcagccaccaaagccattggct
gtacaaaatgccgttgattttctgaaaatgattggggcactagatgagaaggaaagtctg
acaaatcttggaaagtttttgtccatgcttccagtagatcccaagcttgggaaaatgcta
attatgggtgctgtctttcggtgctttgatcctgttcttacagtagtatctgggcttagt
gtcagggatcctttccttttgccccaagacaaaaaggatttggcagggacagcaaagtct
agattttctgcaaaagattacagtgatcacatggctcttgttcgtgcgtatgaaggatgg
aaagatgcggaaagagaaggatctgcatacgagtattgctggaggaatttcctctctgcc
caaacacttcaggctatccactctcttcgaaagcagtttagcttcattttgaaagatgct
ggcttggtagatgcagatgcaagcattaacaacagactaagtcacaaccagtcattggtt
cgtgcaattatatgttctggcctctttcctggcattgcatctgttgtgcacagagaaaca
tccatgtcttttaaaacaatggatgatggccaggttttactctatgcgaattctgtcaat
gcacattaccagacaattccttacccatggctggtgtttggtgaaaaagtgaaggtcaat
acagttttcatacgagattccactggtgtatccgattccatactgatgctttttggtggt
gctctaagccaaggtgtacaggctggccatttgaaaatgttggatgggtacgttgacttt
ttcatcgatcctagtatggcggagtgctacttgaagctcaaggaagaacttgagattcat
atccagaagaagcttgaagatcctaaccttgacattcacaaggaggggaagtaccttatg
cttgcaattcaagagcttgtatcaggggaccaatgtgaaggtagatttgtatttggacgt
gaaaacaagaagccgagggagtctaatgaaaacaggttcacaaaagatggaacaaatcct
aagagcttgctacaaacactgttgatgagagcaggacacagcccccctaaatacaaaacg
aaacaccttaagacaaatgagttcagggcgctggtagagttcaagggaatgcaattcgta
gggaaacccaagaaaaacaagcagcttgcagagagggatgctgctatagaggcactagcc
tggttgactcacacttctgacaacagtagggacggagatgatcactctccacctgatgtc
actgacaacatgttgaaacttcttggaaaacgcaggagatcaaagggccgttga
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