Quercus lobata (valley oak): 115986371 Help Entry 115986371         CDS       T07350                                  Name (RefSeq) RNA helicase aquarius isoform X1   KO K12874   intron-binding protein aquarius Organism qlo  Quercus lobata (valley oak) Pathway qlo03040   Spliceosome Brite KEGG Orthology (KO) [BR:qlo00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     115986371  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:qlo03041]     115986371 Spliceosome [BR:qlo03041]  Complex B   Other components    Prp19-related factors     115986371  Complex C     115986371 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Aquarius_N_1st Aquarius_N_2nd AAA_11 AAA_12 Aquarius_N_3rd AAA_19 AAA_30 ResIII UvrD_C_2 AAA_22 SLFN-g3_helicase UvrD-helicase AAA AAA_16 Motif Other DBs NCBI-GeneID:  115986371 NCBI-ProteinID:  XP_030965163 UniProt:  A0A7N2LDB4 LinkDB All DBs Position 4:13818044..13830740 Genome browser AA seq 1530 aa AA seqDB search MTKVYGTGAYDFKRHRVAEYPVDPTSSATQPAAEKPVESALPSTITLLEIQRDRLTKIAE DNWSKAAGGGGGGKGSGSEKRFDPELVKEIYKTELLVKGGRKPVPLQRVMILEVSQYLEN YLWPNFDPDTASFEHVMSMILMVNEKFRENVAAWVCFYDRKDIFKGFLERVLRLKEGIEL SIAEKTNYLVFMINAFQSLGDEVVSETVLRLASLQSWHSLSYGRFQMELCLNQELIKKWK RMIKREAKEATKRGELFDPSTKLEVKFLRNLIEEFLEVLDSTVFSQEQHVNEDNKIIDPY GLKQVDDACVLYCERFMEFLIDLLSQLPTRRYLRPLVADVAVVAKCHLSALYKHEKGKLF AQLVDLLQFYEKFEINDHVGTQLTDDEVLQSHYDRFQSFQLLAFKKIPKLRELALANIGA INKRADLSKKLSELSPMDLRDLVCHKLKLISEEDPWSERVDFLIEVMVSFFEKQQSQKEA INALPLYPNEQIMWDESLVPSINYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYE IREDIQEAVPHLLAYINNEGETAFRGWSRMAVPIKEFKITEVKQPNIGEVKPSSVTADVT FSISSYKAQIRSEWNALKEHDVLFLLSIRPSFEPLSAEEAAKASVPQRLGLQYVRGCEII EVRDEEGTLMNDFTGRIKRDEWKPPKGELRTVTVALDTAQYHMDVSNIAEKGADDVYGTF NILMRRKPKENNFKAILESIRDLMNEYCIVPDWLHNVFLGYGNPSAAQWTNMPDLLEIVD FKDTFLDADHLKDSFPDYQVCFMNPDGRENLQPMPPFRIRLPKTQKGGSHALTGNKISGV DSADGVNMEDTLIVEAYTPPDPGPYPQDQPKQNSVRFTPTQIGAIISGIQPGLTMVVGPP GTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLRLGQGEQE LATDLDFSRQGRVNAMLVRRLELLGEVERLARSLQLPEDVGYTCETAGYFWLLHVYSRWE QFLAACAENEDKPTFVKDRFPFKEFFSDTPHPIFMGESFEKDMRAAKGCFRHLKTMFQEL EECRAFELLKSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQIL EIETFIPMLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGI PYIELNAQGRARPSIAKLYNWRYRDLGDLPYVKEDAVFHRANAGFSYEYQLVDVPDYQGR GESAPSPWFYQNEGEAEYVVSVYMYLRLLGYPANKISILTTYNGQKLLIRDVINRRCVPY DFIGPPSKVTTVDKFQGQQNDFILLSLVRTRFVGHLRDVRRLVVAMSRARLGLYVFCRRS LFEQCYELQPTFQLLLQRPDRLALNLNEITSYTERHVEDTGPIHLVSGVEEMISIFNWRY QERYMSHQFDHYMTYLGQNDQQNSTTLFNAMDTDTPSVQHESSMEEDSRIDGDVLPASHS NGEVDKEASKNDENYRQPESSNSSEENMTE NT seq 4593 nt NT seq  +upstreamnt  +downstreamnt atgacgaaagtgtacggaaccggcgcgtacgatttcaagcggcacagggtggcggagtac ccggtggatccaacgtcgtcggcgacgcagccggcagcggagaagccggtggagtctgcg ctgccgagcacgataacgctgttggagattcagcgggaccggctcacgaagatcgcggag gataactggtcgaaagctgccggaggaggtggaggaggtaaaggctccggcagtgagaag cggttcgatccggagctggtgaaggagatttacaagacggagttgctggtcaaaggaggg agaaagcccgtgccgttgcagagggtgatgattttggaggtgagtcagtatttggagaac tacctctggcccaatttcgaccccgatacggcgtcgttcgagcacgtcatgtcgatgatt ctcatggtcaatgagaagtttcgggagaatgtggcagcttgggtatgcttttatgatcga aaagacatttttaagggattccttgagagggtccttcggctgaaggagggaatagaatta agcattgccgagaagacgaattacttggttttcatgatcaatgcctttcagagcttggga gatgaggttgtcagtgagactgtgttgagattagcaagtttgcaatcctggcacagtttg tcatatggtcgttttcagatggagctttgtcttaatcaggaattgatcaagaaatggaaa agaatgataaagagagaagctaaggaggcaacaaagcgaggagagctttttgacccgtca actaagcttgaagtgaaattcttgagaaatcttattgaagaatttctggaggtattggat tcaacggttttttcccaagaacaacatgttaatgaagataataaaataattgatccttat ggtttgaagcaagttgacgatgcttgtgttttgtactgtgagaggtttatggaatttctt attgatctcttgagccaactgccaacgaggaggtacctgagacctcttgttgctgatgtg gctgttgttgctaagtgccatctaagtgcactctataaacatgagaaggggaaactcttt gcacaactggttgacttactgcagttctatgagaaatttgagattaatgatcatgttggg actcaactgacagatgatgaggtgctgcagtctcattatgaccgcttccaatcttttcaa ctgcttgcattcaagaagatccccaagttgcgagaacttgcattggctaacattggtgca attaacaagcgggctgatctctctaagaagttgtctgagctttctcctatggatttgagg gatttggtttgccacaagctcaaactgatctcagaggaagatccctggtcagaaagggtt gattttcttattgaagtcatggtctccttttttgagaaacaacaatctcaaaaagaagcc ataaatgctctcccactctacccaaacgagcaaattatgtgggatgaaagccttgtacca agcataaattactctggcgagggttgtctagctcttccaaaacttaatttacaattctta acgcttcatgattatcttctgcgaaattttaatctcttccgtcttgaatcaacatatgag atacgtgaggatattcaggaagctgtaccacatctccttgcctacatcaataatgaagga gaaactgcttttcgtggttggtcaagaatggctgtgccaattaaagaatttaagatcacc gaggtaaaacagccaaacattggagaagtcaagccgtcatctgttactgcagacgtgact tttagcatctccagttataaagcacaaataagatcagagtggaatgcccttaaagagcac gatgttctgtttttactttcgattcgcccttcatttgagcctctaagtgctgaagaagct gccaaggcaagtgtgccacaaaggcttggacttcagtatgtgaggggatgtgagattatt gaggttcgtgatgaggagggaactctcatgaatgatttcacaggaagaattaaaagagat gagtggaagcctccaaaaggggaactgagaactgtaactgttgctttagatacagcgcaa taccacatggatgtcagcaatattgcggagaaaggtgcagatgatgtttacgggacattc aatatattgatgaggaggaagccaaaagaaaacaatttcaaagcaattttagagtctata agagatcttatgaatgaatattgtattgttcctgattggctgcacaacgtatttttgggc tatgggaatccttctgcagcacaatggactaacatgcctgatcttttggaaatagtagat ttcaaagatacttttcttgatgctgaccatttgaaagacagttttccggattatcaggtt tgttttatgaatccagatggcagagaaaacttgcagccgatgcctccttttcgaattagg cttcccaagacacagaaaggcggtagtcatgcacttactgggaataagatatctggtgtt gattcagcagatggtgtcaatatggaggatacactcattgttgaggcatacactcctcct gacccaggtccttatccccaagatcagccaaaacagaactcagttagatttacacctaca cagattggagcaatcatctctggaattcagcctggactaactatggttgtgggtccacct ggtacgggaaaaactgatacagctgtgcaaatcctgaatgtgctttatcacaattgtcct tctcagcggacattgataatcacacattcaaatcaggctttgaatgacctttttgagaag ataatgcagagggatgtacctgcacgttatctactccgtcttggtcaaggagaacaagaa ctagcgactgatctcgattttagtaggcaaggccgtgtgaatgcaatgcttgtccgacgg ttagaactgcttggtgaagtggagaggttggctagatctcttcaactgcctgaggatgta ggttatacatgcgaaactgctggatatttctggttgcttcatgtatactcgcgctgggaa caattcttggcggcttgtgctgagaatgaagataaaccaacatttgttaaagaccgcttt cccttcaaggaatttttctctgacactccgcatccaatttttatgggtgagtcttttgag aaagacatgagagcagctaaggggtgctttcgtcatcttaagaccatgtttcaagagctt gaagagtgtagggcatttgaattgctcaagtcaacggctgatcgagcaaattatctcatg accaagcaggcaaagattgttgcaatgacttgcactcatgcagctctcaagaggaaggac tttcttcagctaggtttcaagtatgacaacttgttgatggaagaaagtgcccaaatattg gagattgagaccttcatcccaatgttgctccagaggcaagaagatggttatgcacggctt aagcgctgcatcctgattggtgatcatcatcagttgcctcctgttgtgaagaacatggct ttccagaagtatagccacatggatcagagtctatttacaaggtttgttcgtctcggcatt ccttatattgagctcaatgcccagggtagagccaggccaagtatagccaaactgtacaac tggaggtacagagatttgggtgaccttccttacgtaaaggaggatgctgtcttccataga gcaaatgctggattctcctatgagtatcagttagtggatgtgcccgattaccaaggtaga ggtgaaagcgccccttccccttggttttatcaaaatgagggagaagctgaatatgttgtc agtgtctatatgtacctgcgtttacttgggtacccggcaaataagatatccatcttgaca acttacaatggccagaaacttttgatccgtgatgttatcaatagaagatgtgttccatat gacttcattggtccacccagcaaggttacaactgttgataagtttcaaggtcagcaaaat gattttatattgctgtctcttgtgcgtactcgctttgttggtcaccttcgtgatgttaga agattggttgttgccatgtctcgtgcccgacttggtttgtatgtgttttgtcgccgatct ctgtttgaacaatgctatgaactgcagcctacatttcaacttctgcttcagagacctgat cgccttgccctcaatctaaatgagatcacatcatatacagaacgacatgttgaagacact ggacctatccatcttgtcagtggtgttgaggagatgattagcatttttaactggaggtat caggaacgatacatgagtcatcaatttgatcattatatgacctacttgggacaaaatgat caacaaaattcaacaactttgttcaatgccatggacaccgatacaccttctgtgcaacat gaaagcagcatggaagaggatagtaggatagatggggatgttctgcctgcaagtcattca aatggggaagtagataaggaagctagtaaaaatgatgaaaattataggcaacctgaaagc agcaattcaagtgaggaaaatatgacggagtag

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