Quercus lobata (valley oak): 115986847
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Entry
115986847 CDS
T07350
Name
(RefSeq) WD-40 repeat-containing protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03082
ATP-dependent chromatin remodeling
qlo03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115986847
03083 Polycomb repressive complex
115986847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
qlo03036
]
115986847
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
115986847
Histone modification proteins
HAT complexes
HATB complex
115986847
HDAC complexes
Sin3A-HDAC complex
115986847
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
115986847
PRC2.2
115986847
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
115986847
Heterochromatin formation proteins
Other heterochromatin formation proteins
115986847
Chromatin remodeling factors
NuRD complex
115986847
NuRF complex
115986847
NuRF complex (fruit fly)
115986847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
EIF3I
WD40_RFWD3
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD_LRWD1
Beta-prop_RIG_1st
eIF2A
MIOS_WD40
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_HPS5
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_NUP159_NUP214
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
115986847
NCBI-ProteinID:
XP_030966046
UniProt:
A0A7N2LG22
LinkDB
All DBs
Position
4:complement(25120904..25127851)
Genome browser
AA seq
423 aa
AA seq
DB search
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
YSVQKMILGTHTSENEPNYLMLAQLQLPLDDAENDARHYDDDRSDFGGFGCANGKVQIIQ
QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHNTE
GYGLSWSKFKQGHLLSGSDDAQICLWDINANPKNKTLDATQIFKVHEGVVEDVAWHLRHE
YLFGSVGDDQHLLIWDLRTPSVSKPVQSVIAHQSEVNCLAFNPFNEWVVATGSTDKTVKL
FDLRKITTALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLPEEST
KAA
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagacgaagaggagatgaggggagagatagaggagaggctgataaacgaggag
tacaagatctggaaaaagaacacgccttttctctacgatctggtcatcacgcacgccttg
gagtggccttcccttaccgtcgagtggttgcctgaccgcgaggaaccgcccgggaaggac
tattccgtccagaagatgattctcggcactcatacttccgagaatgagcccaattacctc
atgcttgctcagctgcagcttcctttagatgatgccgagaacgacgcccgccattacgac
gatgaccgctctgatttcggcggttttggctgcgctaatgggaaggtgcaaataattcag
caaataaatcatgatggggaggttaatcgtgcacgatatatgcctcaaaacccatttatt
attgctactaagacagttagtgcagaagtttatgtttttgattatagcaaacacccatct
aagcctccgctagatggtgcatgcagtcccgacttaagattgagaggccataacactgaa
ggatatggtttgtcgtggagtaagttcaagcagggtcatttactgagtggctctgatgat
gctcagatatgcttgtgggatattaatgcaaatcctaagaacaagacccttgatgccaca
caaatttttaaggttcatgaaggtgttgtagaagatgtagcatggcatctgaggcatgaa
tacttatttggctctgttggcgatgatcagcacctgcttatatgggatcttcggactcca
tcagtgagcaagcctgtccaatctgttattgctcatcaaagtgaggtaaactgcctagct
ttcaatccctttaatgaatgggttgttgcaacggggtctactgataaaactgttaagttg
tttgatcttcgcaagattaccactgcacttcacacctttgactgtcacaaggaggaggtt
ttccaagttggctggaatccaaagaatgagaccatattagcatcttgttgtcttggtagg
agacttatggtgtgggatcttagcaggattgatgaagagcaaacaccagaggatgctgaa
gatggaccgccagagttgctttttattcatggcggtcacacgagtaaaatatctgatttt
tcgtggaacccatgtgaagattgggttgttgctagtgtagccgaagacaacatacttcaa
atctggcaaatggcagagaacatctatcatgatgaagatgatttaccagaagaatccaca
aaggctgcttag
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