Quercus lobata (valley oak): 115986995
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Entry
115986995 CDS
T07350
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115986995
03036 Chromosome and associated proteins [BR:
qlo03036
]
115986995
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
115986995
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
115986995
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
115986995
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MOV-10_beta-barrel
AAA_11
Motif
Other DBs
NCBI-GeneID:
115986995
NCBI-ProteinID:
XP_030966293
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All DBs
Position
4:79620432..79627246
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AA seq
578 aa
AA seq
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MGGLFSSPDQSSSQLPPTFSSYSSNPLPPTFSSRPSASSSNLSRSSSKPSPSSLKTPVDS
STSYASYPKTTEPPYASSSSSTSYKLPQSSPSGVPYSSKPPPSSSGPSPSSTKQPPAFKP
ILHTAPNEVTNEEGKTTYAWEKGEPIYAIPEDIKGLVKRDIAPQVLKQPLSPSTYKAYFA
ALLYAEDYYLEKWSNFLLEKVTLKLEEAALHKKSKKSKNSKGSAEEDDKIFVEFEIDSIP
EKRPFLLSRDMVYARPSDKTVEPFQGFIYRVVKSKCVLVEFGDDFHSQHHTNRKYDISFS
FNRVCLKRAHQAVEAALNPSSHNFLFPECVPRKNIVNPPALRNTYDKLNTNESNAVRRIL
SFQGSPPYLLAGPLISTNAPMYVPEQKVSARTGVVVCEAVIEIYKTSQENRILICAPINR
TCDVLMRSLREGIPESDMFRANAAFREIDGVPSDILRSCPVKDECFACPPLQKLRKFKII
LSTFVSSFRLHNEGIAAGHFSHIFLVDASSTTEPEATIALANFANENTSVIVTGAPGNHS
GWIRSNIARKYGLGKSYFERLREVGPYQIPNPMFITEL
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgggaggccttttcagcagtcctgatcagagttcttcccaattgccacctacattttct
tcttacagttcaaatccattgccacctacattttcctctagaccatctgcatcttcctca
aacctatcccgatcttcatcaaaaccatctccatcatcccttaaaactccagttgattct
tctacatcatatgcatcttaccccaagaccactgaacccccatatgcttcttcttcttct
tcaacttcgtataaactacctcaatcttcaccttcaggggtcccatattcatctaagcca
ccgccttcttcctctgggccatctccgtcttccacaaagcaaccaccagcttttaagcca
attctgcatacagctcccaacgaggtaacaaatgaagaagggaagacgacttatgcgtgg
gaaaagggtgaacccatatatgctattcctgaggatatcaaaggtctcgtcaagagagac
attgcacctcaagttctgaagcagcctttgtctccttcaacttacaaggcttattttgct
gctctgttatatgctgaggattactacttggagaaatggagtaatttcctgttggagaaa
gtgacattgaagttggaggaagcagcacttcataaaaaatcaaagaaatcaaaaaattct
aaaggaagtgctgaggaggatgataaaatctttgtagaatttgagattgattctattcct
gagaagcggccattccttttatcaagggacatggtttatgcacgaccttcagataaaacg
gttgagccatttcagggttttatctatcgtgtggtgaaaagcaagtgtgtattagttgag
tttggagatgattttcattcacagcatcatacaaatcgcaaatatgacatcagcttctca
ttcaacagagtttgtctaaaaagggctcatcaagcagttgaagctgcattaaatccttca
tcccacaacttcctttttcctgaatgcgtccctcggaagaacatcgttaacccaccagct
ctgcgtaatacctatgataagcttaatacaaacgaatcgaatgcagttcgtcggattcta
agctttcagggttcaccaccttatcttcttgcgggcccgctcattagcactaatgcgcca
atgtatgtacctgaacaaaaagtgtcagcaagaacaggagtggttgtctgtgaggcagta
attgaaatatataaaacctctcaagagaacagaattcttatatgtgcacctataaaccgc
acatgtgatgtgctaatgagaagtttgagggaggggattccagagtcagatatgtttcga
gccaatgctgcatttcgagagatagatggagtacccagtgacattctgcgctcatgtcct
gtaaaagatgaatgttttgcatgtcctccactccaaaaacttcggaagttcaagataatt
ctgtcaacttttgtgagtagctttcgactacacaatgaaggcatagctgctggacatttt
agccatatttttctagtggatgcctcgtcaaccacagagccagaagcgacaatagctttg
gctaattttgctaatgagaatacatctgttattgttactggtgcacccggaaaccattca
ggttggatccgctctaacatagcaaggaaatatggattggggaagtcatattttgaaaga
cttcgtgaagttgggccatatcaaatccccaatccaatgttcatcacagagctataa
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