Quercus lobata (valley oak): 115987009
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Entry
115987009 CDS
T07350
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
qlo03009
]
115987009
Ribosome biogenesis [BR:
qlo03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
115987009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
DUF1848
RYDR_ITPR
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
115987009
NCBI-ProteinID:
XP_030966307
LinkDB
All DBs
Position
4:complement(81893916..81925009)
Genome browser
AA seq
2705 aa
AA seq
DB search
MATPSQAQAVKSLNKSPGRRRFVFKNFSQRVEEIEIDVFRSLNKVKAEPSEGSSFFRDCL
TEWRELNTAEDFISFYEEMLPLVQTLPLIILQKELIFSKLIPRLQMSARLSLEPILRLLA
ALSRDLLVDFIPFLPRIVDSLVSLLETGADREPEIIEQIFTSWSYIMMYLQKYLIRDLVY
VLKVTLKLRYYPKEYVQEFMAEAISFLFRNAPAEQLQEGIKKIMTEVIKKPLPARKCGIS
ALLFYVMRGSSSRFHSRAERVLRLLMDDSIFGSDAVVEVIITAFQRLCENIEPKELDLMW
KCLYEKITECVTNGCILHLSHLLSLLISIVQIHNGQIVYDYQSLLEHVGLLVQRFVVPSD
LVKAEDHQEEVVDKVLELIVCILNGLHSSNDMSTISSCSLQWAPVFKLRNSSLLTFIREL
LQKDPCIVDIFRVNILSALNDMVETSEEVIYLLLSFCEIMEAKAQGSNFLVGTFGKGFPK
IQSCLQEAVSDWIREIKEIVRIDPSSTHIHETKFALLWGIIRCYPQLIDIQKKSSCLMDL
IDALNQLLMMEADCIAGVPKQTWQCLIGAALSSYNKSHLGKESDSEETSKFLHLVKRYRS
SLPVLSAVADYLDFVYGPISEAVNSNRMYHQELAGEKVVDAVSIFSDNLRHSNKEIRLST
LRILCHYQPLGCVDSTNDQPAAKKMRTEVSQNSLVESQGINVIQLLLSIEETPLSISTSR
KVILLISKIQMGLSAGRLPDAYAPLVLNGIIGILNNRFSYLWNPAIECLAVLMSQHFGLV
GDRFVSYLEQYQSIFHTSNEVYEGNSKAYESSDLVKCFNSFVYPGSESTPCATILSLLLQ
SLQKIPIVIESRSREFVPLFLKFLGYDCNVLASVGIFNSHACKGKEWKGVLKEWLNLLKV
MRNPRSFYQSQFLKEVLQNRLLDENDAEIQMKVLDCLLIWKDDFLLPYDQHLKKLISSKY
LREELTTWSLSKESNLIEDQHRAYLVPIVIRLLMPKVRNLKTLASRKNASINHRKAVLGF
IAQLDVEELPLFFALLIKPLQIISQEADSTACWLWTSPENFMDQFQAFNFLKYFTVDNII
ALSWKKRYGFLHVIEDVLGVFDELHLRPFLDLLMGCIVRLLGSCASNIDVAKCNGFSSLE
DHSSADLTLLEKDDAPTNHVLTSSAMKQFKDLRSLCLKVISFVLNKYEDHEFGCEFWDLF
FASVKNLVDGFKQEGSSSEKPSSLFSCFVAMSRSHRLVSLLSRETKLVPDIFSILSVKSA
SEAIVSCVLKFVENLLNLDSELDDKDDAAKRVLLPNLEALICSLHCLFLSDSATKRKLVK
CPGERDIRIFKLLSKYIKDPLLASKFVDILLPFLAKRAQNSDLCSEAVQVFRDIIPVLGS
DSTKTILNAVSPLLTSVELDMRLSICDLLDSLAEVDPSILLVAKLVRDLNATSAAEIGGL
DYDTIVNAYEKICVDFFYTIHEDHVLLILSHCVYDMSSEDLILRHSAFRSMCSFIEFSAL
VISQEGKSHQEVIAKMIASDDGCWTRASIQHIANKFLLKHVGNTLSRETNIKKEWIDLLR
EMVLKLPEVANLNSLGMLCSNDAEVDFFNNIIHLQRHRRARALLRFKNVISTSNMSEGII
NRIFVPLFFNILFDVQDGKGEHVRGACIEALAAISGHAEWKSYYALLVRCLREITLKPDK
QKLLLRLTCSILDQFHFLEISKSQEGNDSFVNDSDSVTIGSDSSAILHKCSTFNIATEIQ
TCLHKTVLPKIQKLLNFEPDKVSVNINLAALKLLKLLPGDVMDSLLSSIIHRIANFLKNR
LESIRDEARSALAACLKELGLEYLQFVLRVLRATLKRGFEMHVLGYTLNFILSKSLLIPV
IGKLDYCLGDLLSIVENDIMGDVAEEKEVGKIASKMKETKTRMSFKTLELIAQSITFKTH
ALKLLSPVTTHLQKQMTPKVKTELERMLNHIAVGIERNPSVDQTDLFIFVYGLIEDGIKD
GNGQGEQSLGAEARKHPRKDMSGKRITSGRVVNVSSHLIIVFALRILHKRIRSLKRDKID
EHVLSMLDPFVTLLGNCLGSRYEDILSASLSCLTPLVRLPLQSLESQADKIKVAVLDIAQ
GLVSSSSPLMQSCLRLLAVLLRSSKITLSSAQLHLLIQFPLFVDLERNPSSLALSLLKAI
VSRKLVVPEIYDLVTQVGELMVTSQVDSIRKKSSQILLQFLLGYQLSVKRLQQHLAFLLS
NLRYEHSTGRESVLEMIHAIMVKFPKKNVDEQSLTLFTHLVICLSNDHDNKVRSMTGAAI
KKLIGCVSPHSLHSILDYTLSWYSYSEETQKLRSAAAQVLGLSVEVMKKGFQRYVNKVLP
VTRKILQSAINVVTNRQLDFPEETAVTSWRETYYSLIMLEKMLHQFHDLFFESDLEDIWE
AICELLLHPHMWLRHISSRLISLYFANVIDASRENQEKSLGTYFLMKPSRLFIIAVSLCC
QLKTPFNDDAASNLITQNFVFTICGVHSLMGQMEYIDSPNFWSSLEEHEQGRFLKAFQLL
DSRKGRSVYFSLTSGDQKDHDHSKDIRYLIISYLLKRIGKIALQMDAIQMKIVFNSFEKI
SSQISPDDCLHYAYEILLPLYKVCEGFAGKVIPDDIKQLAQEVCETLRKVLGIQSFVQIY
SEIRKNLKAKRDKRKQEEKIMAVVNPMRNAKRKLRIAAKHRANKKRKIMTMKMGRWMNNK
KPRTM
NT seq
8118 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaccgtcgcaagctcaggcagtgaagtctctcaacaaatccccaggacgacgc
cgttttgttttcaagaatttttctcagagagtagaggagattgaaatcgatgtgtttcga
agccttaataaagtgaaggctgagccttcagaagggtcttcctttttccgtgactgcctc
acagaatggagggaattgaatactgcagaggattttatttcgttttacgaggaaatgttg
cccctggtccagacattacccttgattatattacagaaagagttaattttctcgaaactt
atcccacgattacaaatgagtgcgaggctatctcttgagcctattcttaggttacttgca
gctctatctagagatctcctggttgattttataccctttttgccaaggattgttgattct
ttagtgtctctcctggaaactggtgctgatagggaaccagagataattgagcagattttt
acgtcgtggtcatatattatgatgtacttgcaaaaatatctaattcgtgaccttgtttat
gtgctcaaggttacattaaaactacgatattatcccaaggagtacgtccaagaatttatg
gctgaggcaatatcattcttgtttaggaatgcaccggctgagcagctgcaggaaggtatt
aaaaagatcatgactgaagtcataaagaaaccattgcctgccaggaaatgtggcatcagt
gctttacttttttatgttatgagagggtcgtcatcaaggttccactcaagagcagagcga
gtattgcggttattgatggacgattcaatatttggttcagatgcggttgttgaagttata
attactgcctttcaaagactatgtgagaacatagagccaaaggagttggatttgatgtgg
aaatgcttatatgagaaaattactgagtgtgtgactaatggatgcattttgcatttaagt
catctattgtcactgcttatttccattgttcagatccacaatggacaaatagtttatgat
taccaatcattacttgaacatgtgggattgcttgtgcaaaggtttgttgtgccttctgac
ttggtgaaggcagaggatcatcaagaagaagttgttgataaggttctagaattgattgta
tgcattctcaatgggctccatagttctaatgatatgtcaactatctcaagttgttcattg
caatgggctcctgtatttaagttaaggaactcaagtttgttgacttttattagagaacta
ctacagaaggacccttgcatagtagatatcttcagagttaacatcttaagtgctttgaat
gatatggtagagacttcggaagaagttatttatctattactgtccttctgtgaaataatg
gaagcgaaggcacaagggtccaactttttagtcggcacatttggaaaaggatttccaaag
attcagagttgtttgcaggaggctgtctctgattggataagggaaataaaagaaattgtg
cgcatagatccatcatcaactcatattcatgagactaagttcgctctgctgtggggaatc
attagatgctatcctcaattgattgatatccaaaagaaatcatcctgtttaatggatttg
atagatgcactcaatcagctactgatgatggaagctgactgcatagctggtgttcctaaa
caaacttggcaatgcctaattggggctgctttgagttcttacaacaagtcacatcttggt
aaagaatctgactctgaagaaacgagcaaatttttgcatcttgtgaaaagatacagatct
tctttgccagtattgtctgctgttgctgattatttggattttgtgtatgggcctatatcg
gaagctgtcaacagcaatagaatgtatcatcaagaacttgctggcgagaaggttgtggat
gcagtaagcatattttctgataatttgcgccactcaaacaaggagattcgcctctcaact
cttagaatattgtgtcactatcaacctctgggctgtgtggattctacaaatgatcaaccg
gctgcaaagaaaatgagaactgaagtctctcaaaattcccttgtggaaagtcagggtatt
aatgttattcagttgcttttgtctattgaggaaactcctctttcaatttctaccagcagg
aaagttatcctattgatttctaaaatacaaatgggcctctcagccggcagattacctgat
gcctatgcgccccttgttttgaatgggataattggcatattgaataaccgatttagctat
ctttggaatccagcaatagagtgccttgcagtcttgatgagccaacattttggacttgta
ggagatagatttgtttcttatcttgagcaataccaatccatatttcatacatctaatgaa
gtatatgaagggaattctaaagcttacgagtcaagtgatcttgtcaagtgttttaattcg
tttgtatatccgggctctgagagcactccttgtgcaacaatattatccttgttgctccaa
tcgttacaaaagattccaattgttattgaatctcggtcacgagaatttgtacctttgttc
ttaaagtttcttggctatgattgcaatgttcttgcaagcgtgggaatcttcaattcacat
gcttgtaaaggcaaagagtggaaaggtgtccttaaagaatggttgaacttgctgaaagta
atgcggaaccctaggtccttttatcagagtcaatttcttaaagaggttctgcaaaatagg
cttttggatgaaaatgatgctgaaatacagatgaaggttcttgattgcctcttgatttgg
aaggatgattttttgctcccatatgatcagcatctgaaaaagttgataagctccaaatat
ttgcgagaagaactaacaacatggagtttatccaaagaatctaatctaattgaagaccaa
cacagagcttatctggttcctatagttattcgtcttctaatgccgaaagtcagaaatttg
aagacacttgcctctagaaagaatgcaagcattaatcaccgaaaggcagtcttgggtttc
attgctcaacttgatgttgaggagcttcctcttttctttgcattgttaataaagccactg
caaattatttcacaagaagctgatagtactgcttgttggctttggacttcacctgaaaat
tttatggatcaatttcaggcttttaatttcttaaagtatttcaccgtggataatataata
gctctgtcttggaagaaaagatatggttttctgcatgtgattgaagatgttctaggagtt
tttgatgaattgcatcttagaccttttcttgatctattaatggggtgtattgttcggcta
ttgggaagctgtgcatcaaatattgacgttgcaaagtgcaatggattttcctcacttgaa
gatcattctagtgctgacctaactttacttgagaaagacgatgctccaacaaatcatgtc
ctgactagcagtgctatgaagcagttcaaagatttaaggtctctatgcctgaaagtaatt
tcttttgtcctcaataagtatgaagatcatgaattcggttgtgagttctgggacctgttc
tttgcatctgtgaaaaatttagttgacggttttaaacaggagggttccagtagtgagaag
ccaagttcattattctcttgctttgttgctatgagtagaagccacaggcttgtatcactg
ctaagtagagaaacaaaacttgttccagatatattttcaatacttagtgtcaagtcagct
tctgaagctattgtatcatgtgttcttaagtttgttgagaacttgttgaatcttgatagt
gagttggatgataaagatgatgctgcaaaaagagttctacttccaaaccttgaggcactt
atctgcagcttgcattgccttttcctaagtgatagtgccaccaagaggaaattggtcaaa
tgtcctggggagagagacataagaattttcaaattattatcaaagtatataaaggatcca
ttgctagcaagcaaatttgtagatatcttgctcccatttttagcaaaaagagctcaaaat
tctgatctttgttctgaagctgtgcaagtctttcgagatattataccagtgttagggagc
gacagtactaaaacaattttgaatgcagtttctccactacttacttctgttgaactggat
atgcgtttgtctatttgtgatcttcttgattctcttgctgaagtagatccttctatcctg
ttagtggcaaaacttgttcgtgacttgaatgcaacctctgctgcagaaataggtggactt
gattatgacactatagtcaatgcttatgaaaagatttgtgtcgatttcttctatactatt
cacgaggatcatgtgttgctcattttatcacattgtgtgtatgatatgtcatctgaagac
ttgatcttaaggcatagtgcttttagatcaatgtgttcgtttattgaattttctgcacta
gttatcagccaagaaggaaaaagtcaccaagaagtaattgctaagatgattgcttctgat
gatggttgttggacgagagcatctattcagcatatagcaaacaaatttcttttgaagcat
gtggggaatacattgagtagagaaactaatataaaaaaggaatggatagatttactacga
gaaatggtgttgaaacttccagaagtagcaaatcttaattcattggggatgctgtgcagt
aatgatgctgaagtagattttttcaataatattattcatttgcagaggcataggagagca
agggcattattacgttttaagaatgttatcagtactagcaatatgtcggagggaatcata
aataggatttttgtgccactcttttttaatattttgtttgatgtacaagacggaaaagga
gaacatgttagaggtgcatgcatagaggcccttgcagctatttctggtcatgcggaatgg
aagtcatactatgcattattagttagatgccttcgagagattactctgaaaccagacaag
caaaagctcttattgagactaacttgctctattctggaccaatttcattttctagaaatt
tctaagagccaagaaggcaacgactctttcgtgaatgattctgattccgtgaccattggt
agtgattcttcagccattttgcacaagtgtagtacttttaatattgcaactgagatacag
acgtgcctgcataaaactgttctcccgaagatacagaagctactgaattttgagcctgat
aaggtcagcgttaacatcaatcttgctgcactgaagctactaaagttgcttcctggggat
gtgatggactcactcctttcaagtatcattcatcgcattgcaaacttcttaaagaatcgt
ttggaaagtatacgtgatgaagctagatcagctttggctgcttgtttgaaggagctgggg
ctggaatacctgcagtttgtgctcagggttttgcgagcgaccttgaaacgaggatttgaa
atgcatgtattgggatacactctcaatttcatcttgtccaagtctcttttaatacctgtc
attgggaagttggattactgtttgggagatctcctttccatagtagaaaatgacataatg
ggagatgttgccgaagaaaaagaagtgggaaagattgcttcaaaaatgaaagaaacaaag
acacgaatgtcttttaaaacactggaattgatagcccagagcataacattcaaaacccat
gccttgaagcttctttcacctgttacaactcatttgcagaagcagatgacaccaaaagtc
aaaacagaattggaaaggatgttgaatcacatagctgttggcattgaacgtaatccatct
gtagatcagactgacctattcatctttgtgtatggcctcattgaagatgggattaaagat
ggaaatggtcaaggtgaacaatcattgggtgcagaggcaagaaaacatcctagaaaagac
atgagtggaaaaagaataacttctggccgagttgtgaatgtatcttcacatcttattatt
gtgtttgctctcaggatattgcataaacgaataagaagtttgaaacgggacaaaattgat
gaacatgtgttatcaatgttggatccttttgtcacacttctaggcaactgcttaggttcc
aggtatgaagatattttatctgcatcccttagttgccttactccattggtaagactgcct
ttacaatcccttgagtctcaagctgataaaataaaggtggcagtcttggatattgcacaa
ggtttggtatcttctagcagtcctctaatgcagtcatgtctaagattgctagctgtgctt
ctgcggagtagcaaaattaccctttcatcagctcagttacatctgttaattcagtttccc
ctgtttgttgatctcgaaagaaatccttctagccttgccctttctttgctcaaggcaatt
gttagtcgcaagctagttgttcccgagatatatgatcttgtaactcaagttggggaattg
atggtgacaagtcaagtggattcaattcgaaagaaatctagtcaaattttgttgcaattt
ttacttggttatcagctttctgtaaaacgtttgcaacaacatctagcttttctgctttca
aatctaagatatgagcattcaactgggagagaatctgtgcttgaaatgattcatgcaatc
atggtcaaatttccaaaaaaaaatgttgatgagcaatcactgacattatttacacatttg
gtgatttgcttatccaatgatcatgataataaagttcggtccatgactggtgctgctata
aagaaactcattgggtgtgtaagcccacattcacttcattccattctagactacacatta
tcttggtattcatattcagaagagacacagaaactgcgtagtgccgctgcccaggtcttg
ggattatcagttgaggttatgaagaaaggatttcaaagatatgtcaataaagtattgcct
gtgactagaaaaattttgcaatctgccatcaatgttgtcactaataggcaactagatttt
cctgaggaaactgctgttacttcctggagagagacatattactcactcatcatgttggaa
aagatgctgcatcagttccatgatttgttctttgaaagtgatcttgaggatatctgggaa
gcaatctgtgagctgcttttgcacccacacatgtggttacgccacatatcaagtcgcctt
atatccttgtacttcgccaatgtaatagatgctagcagagaaaaccaagagaaatcacta
gggacttattttcttatgaaaccaagtagactttttattatagctgtttccctctgctgc
caattgaagacaccattcaatgatgatgctgccagcaacctcataacacaaaactttgtg
ttcacaatatgtggtgtgcattctttaatgggacaaatggagtacatagattctccaaat
ttctggtctagccttgaagagcatgagcaaggccgatttcttaaagctttccaattgctt
gattcaagaaaagggagaagcgtatatttctctcttacatctggtgatcaaaaggatcat
gaccactccaaagatattcgatatttgatcatttcttatctgcttaaaagaattggaaag
attgcccttcagatggatgctattcagatgaaaattgtatttaatagttttgaaaaaatt
tcatcacaaatcagtccagacgattgcctgcattatgcatatgaaatccttctaccccta
tataaagtttgtgaagggtttgctgggaaagtgatccctgatgatattaagcaattggcg
caggaagtttgtgaaactctaaggaaagttctaggcatccagagctttgtacaaatttac
agtgagatcaggaagaatctcaaggcgaaaagggataagaggaaacaagaagaaaagatc
atggctgttgtcaatccaatgcgcaatgccaagaggaagttgagaattgctgctaagcat
cgtgctaacaagaaaaggaagataatgacaatgaaaatggggagatggatgaacaacaag
aaaccaaggacgatgtaa
DBGET
integrated database retrieval system
