Quercus lobata (valley oak): 115987408
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Entry
115987408 CDS
T07350
Name
(RefSeq) uncharacterized protein LOC115987408
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115987408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115987408
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115987408
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115987408
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
115987408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
115987408
NCBI-ProteinID:
XP_030966802
UniProt:
A0A7N2LH66
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All DBs
Position
4:complement(50379096..50384699)
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AA seq
630 aa
AA seq
DB search
MRPLYNSFPQQPNSSTAPPSQQVMPPTHSNANSSNLVQKNTTKFRPQFGMNNNPQVQVPF
NNSNMRPSINRPGFMNPPLQNSHLGMPHLGSQPGQSHVGFSPQNNVSNMNPVQGFPVNGQ
FCNMAQNPNQVNVSQPAFVHNMQNSNQQLNQNMGFPNGQFCMPNMLQNMNQFMPTLQMPN
SSQVVSYGIPFCPPYMGVPNQAPRATVPQNPTFFANSQFGLGHCNQVRQQVNQNQQNLVP
PTANANALKPSPFAAQQLQGGNLPALPNHCSVQPQGNLVNNGGIDNPSSNRQDSPNKNYT
MNPKGGQLRGGFQKSQFHRMKNAKRGFPNEHKGKGFSKEKAGKFGHVNSNNQARGQKRSL
SLTYTEQEIQHWCEARRKNYPSKATVEKKQGQKLADAEGIAREAKLRREQLKEILAKQAE
LGVEVAEVPLHYLSESEKQGQRREENRMPFTKKGRFRNRFDKRGRYEKKDRFAKKQKLAG
KDSSDAPSLNKKKPTLLQKLLSADVRRDKSHLLQIFRFMVMNSFFTDWPDKPLKFPSVIV
KESGCESEVVEEKSSPVGKDAEGGNKAVVNKSHDEDDDEDDNGVDEDKNEGDDNNELSYF
TRIEGIIGERTEIPEEEEGEIVDYNDTLPL
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgcgacctctctacaattcctttcctcagcaacctaattcctccactgctccaccttct
caacaggttatgccacctactcattcaaatgcaaattcatctaatttagtgcaaaaaaac
accacgaaatttcgaccccagtttggcatgaacaacaatcctcaagttcaagtccctttc
aataattccaatatgaggccttccataaatcgacctggtttcatgaacccacctttgcaa
aattctcatctgggtatgccccatttgggttctcaaccgggtcagtcccatgtggggttc
agtccacaaaacaatgtaagcaatatgaacccggttcaagggtttccggttaatgggcaa
ttctgcaatatggcgcagaatccgaaccaagtcaatgtttctcagcctgcttttgtgcat
aatatgcagaattcaaaccaacagctcaatcaaaacatgggttttccaaatgggcagttt
tgtatgcccaatatgttgcaaaatatgaaccaatttatgcccaccttgcaaatgccaaat
tcttctcaagttgtttcttatggtatccctttttgtcctccatacatgggtgttccgaat
caagcacctcgggccacagttcctcaaaatcccacctttttcgcaaattcgcagtttggt
cttggtcattgtaatcaggtcaggcagcaagttaatcagaatcagcaaaacttggttcca
cctacggcaaatgcaaatgcattaaaaccatcgccttttgcagctcagcaattgcaagga
gggaacttacctgcactgcctaatcattgttcagttcaaccgcaggggaatcttgttaat
aatggtgggattgataacccaagctccaacaggcaagattcaccaaacaaaaactacact
atgaatccaaaaggagggcagttgcgagggggatttcagaagtctcagtttcatcgtatg
aaaaatgcaaagagagggtttcctaacgaacacaaggggaaagggtttagcaaggagaag
gcaggaaagtttggtcacgttaattccaacaaccaagccaggggtcagaagagatctctt
tctttgacctacacggaacaagaaatccaacattggtgtgaagcacgtcggaagaactac
ccatcaaaagccaccgtagagaagaagcagggtcagaagctagcagatgctgagggtatt
gctagagaggccaaactgcgaagagagcaactcaaggagattctagcaaagcaagctgaa
ttgggagttgaagttgcagaggtaccattacactatctatcagagtcggagaaacaaggg
cagagaagggaagaaaacagaatgccatttacaaagaaagggagattccgaaacaggttt
gataaaagaggaagatatgaaaaaaaagaccggtttgctaagaagcagaagcttgcaggc
aaagattcatctgatgccccttctttgaacaagaaaaagccaacattactgcagaagctt
ctcagtgcagatgtaaggagagataaaagccacctattgcagatttttaggttcatggtg
atgaactctttcttcaccgattggcctgataaacctctaaaatttccttcagtgatagtt
aaagaaagtgggtgtgagagtgaggtggttgaagagaaatcttcacctgtgggaaaagat
gctgaaggtggcaacaaggctgtggttaacaaatcccatgatgaagatgatgatgaagat
gataatggtgtagatgaagacaagaatgaaggtgatgacaataatgaattgtcttatttt
actaggatagaaggtataatcggggagagaactgagatacctgaggaggaagagggtgaa
attgttgactataatgatactcttcctctctaa
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