Quercus lobata (valley oak): 115987728
Help
Entry
115987728 CDS
T07350
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115987728
03036 Chromosome and associated proteins [BR:
qlo03036
]
115987728
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
115987728
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
115987728
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
SPT6_acidic
HHH_9
Spt6_S1
Tex_central_region
HTH_44
Tex_N
SH2
S1
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
115987728
NCBI-ProteinID:
XP_030967181
LinkDB
All DBs
Position
4:22169756..22180361
Genome browser
AA seq
1984 aa
AA seq
DB search
MARKRRSRIVDDDDEDENEPAVASNNEDEEDDEEDLDEFEDDGFLVDDNDDDEEEEESEE
EQQSYKGKQKKKRKRKRKSLRSLMLDDDDLELIRENENLSIMQSEKGGAKFKRLKKVGVD
TELEGPSGISDDDGPLFSDVAEEDEYVPDDEEDEMANFIVDHGKFYGKGAPISSTYKSLS
CQRNLNEKKSRHASKASSAVGEASYTFGNADEVLNLHDQVIAESARPDDSNDFAPFILKD
KYMTEKDAIIKEIDLPERMQIFGEVIGPAPVDEMSIIEECSWILGQLGTYVYPLFCKMPE
QAEGFDLCKRIRKEDIMSFLKLHHVEKCDIPFIAMYRKEQCLSLLKDPEQDEESRDKVDA
KRMPKLKWHKVLWAIKELDKKWLHLQKRKSALQRYYNKHYEEECSNIVSGARLAFIKELF
ETTIKSLKKAESERDVDDVDMEFSLHFPPTEGGNGGKYKRPAKKSQYSYCNKAGLRELAH
KFGDSKQFGFQITLERTGFKFDEDPEEFPEEIASNFMCEMFETPEAVLKGARHMAAVDIS
CETLFRKHARGIFMDRALISTSPTPKGNKEIDCFHQYAGVKWLRNKPLSKFEDMQWLLIQ
KAEEEKLLEITIKLPESALDELISASYDVYLRDNDNRSAQIWNEQRKLILEDAIKNFLLP
SMEKEARALLTTRAKNWLLIEYGKQFWNRVSVAPYHCKENVVNKNKGIAPRVMACCWGPG
KPETTFVMLDSSGEVLDVLHAGSITKRSQIVIHQQQRKNDQQHVLKFMKNYRPHVIVLGA
ANVACTRLKDDIKEIIFKMVEENTGDISQVMDEISIVYGDESFAHIYEHSQISSEQLSGQ
PGIVKRAVALGRYLQNPLAMIATLCGAQREIVSWKLSSLDHYLTGDEKWEMIEWVMVDVT
NQVGLDLNLAASHAWLFGPLQFVSGLGPRKVASLQRQLLGGKEIRNRRDLISCGLRGKND
FYNAVGFLRVCCSGLHYTGKDTNLLDNTRIHPESYSLAEDLAKAVHKFHVQDDANNADSL
EEPVQYINDNPQLLKSFDITDYSEKYEIEMGENRRETLYDIRMELLHGFRDPRRPYEEPT
QDEEFDMVSGKNGNALAEGRIVQATVRNLQSHRAFCVLDSGLTGVLVEEDFSDNADGISL
ADKLHVGDILTCKIKQIEKDKFQVCLTCKESELKSNGDQNSSEADPYYSGGQSSLRNQQG
KAHNGELAKKPFNPRMIVHPHFQNLTLNQAMEFLSNKDAGEFIFRPSARGPSYLTLTLKI
CDGLFVHKDITEGGKDHSNITSLLRLGKTLKIGDDYFEDIDEVVDRYVDPLVTHLKTMVS
FRKFKRGSKAEVDEVLRVEKSEYPTRIVYCFGISYEHPGTFILSYIKTTHLRHEFVGLHP
KGFKFRKQMFGKIEHLVAYFQKHIDDLQHESAPMQKSAFGGSSVKTSDWGSNDSGWQSQP
KSGLDKSTPFPRDTNDYGDGGQGLGHGRGRGRGRGRGRDDSSHENKDSGYDTYSKSDFGS
KDGDGGGGGWSTFHSEKVQNSPSKWDSDCTNTNGGNWGGVGDGTGSWSGGARDNNNKTFS
GEPGSGGTDGVGGTSWGPSGGTGGWGDSTSSKGGGAGGVTWGDSKGAESNSGGNQGGNNV
LGHGGASENKNNTFFGELGSGGTDGVGGTSWGPSGGTGGWGDCNKGGGAGGWGDSSKGRG
AGGVIWGGSKGAESNNDGNQGVNNGWSHGGSDGGWSNSPDAKIKNSPGKWDNNHANASGG
NWGGGGDGTGGWSRGGSASFGNWDNNGEGGHTSGYKMGCSNDHGYGQGQGRGPNRGRGRG
RGRGRGRGHGRGRDSYNIGDEDNNHSGGTNTGGWSGGGSASFDNWDNNGEGGHTSGYNMG
CSNEHGYGQGRGRGPNHGRGRGGQGRGEGHGRGRGQGHGRGRGRDSYNSRDDDNNYTSFS
GLGSGGTDSAGGTSWGPSGGTGGWSDSSKGRGAGGGSGERSGSTGGWGDSSKGRGAGGGT
WGGS
NT seq
5955 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggaagagaaggtcacgcattgtcgacgatgatgatgaagacgaaaacgaacca
gctgtagcttccaacaacgaagacgaagaagacgatgaagaagatttggatgagtttgag
gatgatgggtttttagtagatgataatgatgatgatgaagaagaagaagaatcggaggaa
gaacaacaaagctataaaggcaaacaaaagaaaaagaggaaaaggaaaagaaaatcgttg
aggagtcttatgcttgatgacgacgatcttgagttgattcgagagaatgaaaacttgagc
attatgcaatcagagaagggaggtgcaaagtttaagcggctcaaaaaggttggggttgac
actgaactggaagggccctctggcatttcagatgacgatggaccactatttagtgatgtt
gctgaagaagatgaatacgtgcctgatgatgaagaggatgaaatggcaaattttatagtg
gatcatggaaaattttatgggaagggagcccccataagttctacttacaaatctctttct
tgccaaagaaatctgaatgaaaagaagtcaaggcatgcatcaaaagcttcatctgcagta
ggggaagctagttacacttttggcaatgctgatgaagtactgaatcttcatgaccaagtt
atagctgagagtgccagacctgatgattctaatgattttgcacctttcatcctcaaagac
aagtacatgacagagaaggatgctattataaaggagattgacttgcccgagaggatgcag
atatttggggaagtcattgggcctgctccagttgacgaaatgagcattatagaggagtgt
tcttggatacttggtcaacttgggacgtatgtgtatccattgttctgcaagatgccggaa
caagctgaaggatttgacctatgtaaaagaattcgtaaggaagacattatgagctttttg
aaattgcatcatgtggagaagtgtgatattccgtttattgctatgtatcggaaggagcag
tgcctgagtctcttgaaagacccagagcaagatgaagaaagcagggataaggttgatgct
aagagaatgcctaaactgaagtggcacaaggttctttgggccatcaaggagcttgacaaa
aagtggttacatcttcagaagcggaagagtgctcttcagaggtactataacaagcactat
gaagaggaatgtagcaatatagtcagtggggcaaggcttgcctttattaaggagctcttt
gaaaccaccatcaagtctctgaagaaggctgaatctgagagagatgttgatgatgtggac
atggagtttagtttacattttcctccaactgaggggggcaatggtggaaaatataagagg
cctgcaaagaaatcacaatatagctactgcaataaggctggcctgcgggagcttgcacac
aagtttggtgactccaagcaatttggcttccaaataactttagagagaactggatttaag
tttgatgaggatcctgaggaatttccagaggagatagcttcaaattttatgtgtgaaatg
tttgaaactcctgaagcagtgctcaaaggtgctaggcacatggctgcagtggatatcagc
tgtgagacattgtttaggaaacatgcccgtggtattttcatggatagagctttaatctca
acaagccctaccccaaaaggaaacaaggaaatagattgttttcatcagtatgcaggggtc
aagtggctacgcaataaaccactctcaaaatttgaggacatgcagtggcttcttattcag
aaggcggaagaagagaagctccttgaaattaccataaagttgccagagagtgccctggat
gagttgattagtgcatcctatgatgtttatcttagagacaatgataatagatctgctcaa
atttggaatgaacagcgcaagttaattctagaggatgcaattaaaaattttcttcttcct
tctatggagaaggaagcaagagctctgttgaccacccgagcaaaaaactggttacttata
gaatatgggaagcagttctggaacagggtctctgtggcgccatatcattgtaaggaaaat
gttgttaacaagaataaaggtattgcaccaagggtaatggcctgttgttggggtccagga
aagccagaaactacatttgtaatgttggattcttcaggagaagtgcttgatgtgttgcat
gctgggtcaattactaagcggtcacaaattgttattcaccagcaacagaggaagaatgac
caacagcatgttcttaagttcatgaaaaattatcgtccacatgtcattgtcttaggtgct
gctaatgtggcttgcacacggttgaaggatgatatcaaagagatcatttttaaaatggta
gaggagaatactggagatatcagccaagttatggatgagatcagcattgtttatggggat
gaatcctttgcccatatttatgaacattcacagatttcctcagaacagctgtctggacaa
ccaggcattgtaaagcgtgctgtggctctcggtcgttacctccagaacccattggctatg
attgcaacattgtgtggggcccaaagagagatagtatcttggaaacttagctccttggat
cactatcttacaggtgatgagaagtgggagatgatagaatgggttatggtggatgttaca
aaccaggtaggtctagacttgaacttggctgcaagccatgcctggctttttgggcctttg
caattcgtttccgggcttggacctagaaaggtggcttcattacagaggcaattacttgga
ggtaaagaaattagaaatcgaagagacttaattagttgtggactgagaggaaagaacgat
ttctataatgcagttggttttttacgagtttgttgtagtggactgcattatactggcaaa
gatactaatctgttggataatacaagaattcaccctgagtcatatagtcttgcagaggat
ttggcaaaggcagttcataaatttcatgttcaggatgatgcaaataatgctgattccctg
gaagagccggtacagtacattaatgacaatccacaactgctaaaaagttttgatattact
gattattcggaaaaatatgaaatagaaatgggagaaaacagaagagagactctttatgat
attagaatggaacttcttcatggatttcgagatcctcgaaggccttatgaagaaccaact
caggatgaggaatttgatatggtatctggaaaaaatgggaatgctcttgctgaaggaaga
atagtccaggcaacagttcgcaatttgcaatctcatcgagctttctgtgtgcttgactca
ggcttgactggggtactcgtagaggaagacttttcagataatgctgatggcatttcttta
gcagacaagctgcatgtaggtgatattcttacctgcaagatcaaacaaatagaaaaagac
aaattccaggtgtgtctgacttgtaaagaaagtgaattaaagagtaatggagaccaaaac
tcttctgaagcagacccttattacagtggaggccagagcagtttacgaaatcagcagggg
aaagcccacaatggggagctagcaaagaagcctttcaacccaaggatgattgttcatcct
cattttcagaatctaactttgaatcaagcaatggagttcctatcaaataaggatgctgga
gaatttatttttcgccctagtgccagaggtccatcttatcttactttaactctgaaaatc
tgtgatggactttttgtgcacaaagacatcaccgaagggggaaaggatcacagcaatatt
acaagcttgcttcgtcttggaaagacattaaaaataggggatgattactttgaggatatt
gatgaggttgtggatcgttatgttgacccactggtaacccacctgaaaacaatggttagt
ttccgaaaattcaagaggggttcaaaagcagaggttgatgaagtgttgagagtagaaaaa
tcagaatatccgactagaattgtttactgttttggaatttcttatgagcatcctggaact
ttcatcttgtcttatataaaaaccacacatctacgtcatgagtttgttggtctgcatccc
aagggattcaagtttaggaagcaaatgtttgggaagattgagcatttggtggcatatttc
cagaagcatattgatgatttgcagcatgagtcagcaccaatgcaaaaatctgcatttggg
ggttcttctgtaaagactagtgattggggaagcaatgatagtggttggcaaagccagcca
aaatcaggcttagacaaatctaccccttttccaagagatacaaatgactatggagatggt
ggccaaggccttggtcatgggcgtggacgtggacgtggtcgtgggcgtggtcgtgatgac
agcagccatgaaaataaagattctggttatgatacatactcaaagtcggactttggttcg
aaggatggagatgggggtggtggtggatggagcacttttcatagtgaaaaagttcagaat
tcacccagcaaatgggatagtgattgtactaatactaatggaggaaattgggggggtgta
ggtgatggtacagggagttggagtgggggtgcaagggataacaacaataagactttctct
ggtgagccgggcagtggtggaactgatggtgttggtggaacaagttggggacctagtggt
ggtacaggtggttggggtgatagcactagcagtaagggtggaggtgcaggtggtgtcact
tggggtgacagcaagggagctgaaagtaatagtggtggcaatcaagggggcaataatgta
cttggccatgggggtgcaagtgagaacaaaaataatactttttttggtgagttgggcagt
ggtggaactgatggtgttggtggaacaagttggggacctagtggtggtacaggtggttgg
ggtgattgcaataagggtggaggtgcaggtggttggggtgatagtagtaagggtagaggt
gcaggtggtgtcatttggggcggcagcaagggagctgagagtaataatgatggcaatcaa
ggtgttaataatggatggagccatgggggtagtgatggtggatggagcaattctcccgat
gccaaaattaaaaattcacctggaaaatgggataataatcatgctaatgctagtggtgga
aattggggtggtggtggtgatggaactggtggttggagtaggggtgggagtgccagtttt
ggcaattgggataacaatggggaaggtgggcatactagtggttacaaaatgggttgctcc
aatgatcacggttatggacaaggacaaggacgtggtcctaatcgtggtcgaggtcgtggt
cgaggtcgtggacgtggacgtggacatggacgtggacgtgactcttataacataggggat
gaggacaacaatcatagtggtggaactaatactggtggttggagtgggggtgggagtgcc
agttttgacaattgggataacaatggggaaggtgggcatactagtggttacaatatgggt
tgctccaatgagcatggttacggacaaggacgaggacgtggtcctaatcatggtcgaggt
cgtggtggtcaaggtcgtggtgaaggtcatggacgaggccgtggccaaggtcatgggcgt
ggacgtggacgtgactcttataacagtagggatgatgacaacaattatacttcctttagt
gggttgggcagtggtggaactgatagtgctggtggaacaagttggggacctagtggtggt
acaggtggttggagtgatagcagtaagggtagaggtgcaggtggaggaagtggggaacgc
agcggtagtacaggtggttggggtgatagcagtaagggtagaggtgcaggtggtggcacc
tggggtggcagttag
DBGET
integrated database retrieval system
