Quercus lobata (valley oak): 115988317
Help
Entry
115988317 CDS
T07350
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115988317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qlo03041
]
115988317
03009 Ribosome biogenesis [BR:
qlo03009
]
115988317
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115988317
Spliceosome [BR:
qlo03041
]
Complex A
U1 snRNP components
U1 related factors
115988317
Complex B
115988317
Ribosome biogenesis [BR:
qlo03009
]
Eukaryotic type
Pre-60S particles
Helicases
115988317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
115988317
NCBI-ProteinID:
XP_030967703
LinkDB
All DBs
Position
5:12817985..12831030
Genome browser
AA seq
505 aa
AA seq
DB search
MSRYDSRSGDPSSYRDRRSDSGFGAYTGYGGSVRSSSSRNSYEVVESPRKLDLDGLTPFE
KNFYVESPAVAEMSDREVEDYRLQREITVEGLDVPKPVKSFRDVGFPDYVIQEITKAGFV
EPTPIQAQGWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILSPGDGPIVLVLAP
TRELAVQIQNECTKFGASSKIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLDSH
HTNLRRVTYLVLDEADRMLDMGFEPQIRKLVSQIRPDRQTLYWSATWPKEVEQLARQFLY
NPYKVIIGSQDLKANHAIRQHVDIVSENQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI
TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELISILEEAGQKVSPDLAAMGRG
APPPPSGHGGFRDRGRGHGSGRSWN
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctatgacagccgctccggtgacccctcctcctaccgtgaccgcagaagtgat
tcgggttttggtgcatacacgggctatggtggctcagttcggtcctcatcgagcagaaat
agttatgaagttgtagagtcaccaaggaagttggatttggatgggttgactccttttgag
aagaacttctatgttgagtcaccagcggtggcagaaatgtcagatagggaggttgaggat
tatcggctgcaaagggaaattactgttgagggccttgatgttccaaagcctgtcaagagt
tttcgtgatgttgggtttccagattatgttattcaagagattacaaaagctggctttgtc
gaacctacccctattcaagctcaaggatggccaatggctctaaggggccgtgatctaatt
ggtattgctgaaacagggtcagggaagacacttgcctacctgttgcctgccattgtccat
gttaatgcccagcctattctttctcctggagatggcccaattgttttggtattagctcca
acccgtgaacttgctgttcaaatacaaaatgaatgtactaaatttggtgcatcatcaaaa
attaaaaatacatgcatatatggtggggttccaaagggacctcaagttcgtgatcttcag
aaaggcgttgaaattgtaattgcgacacctgggaggttgattgatatgttggattcgcat
catacaaacttgcgaagggttacatatcttgtgttggatgaggcagatcggatgttagat
atgggttttgagcctcagattcgaaagcttgtttctcagattcgcccagatcgtcaaact
ttgtactggagtgctacctggcctaaagaggttgaacaacttgctaggcagtttctttac
aacccgtacaaagtgataataggatctcaagatttgaaagctaaccatgctatacgccag
cacgttgacattgtttctgaaaaccagaaatataacaaattggttaaattgctggaggat
atcatggatggcagccgaatattgatcttcatggataccaagaaaggatgtgatcagatt
acccggcagcttcgcatggatggctggccagctctttcaattcatggagataaaagtcaa
gcagagagggattgggtcctctcagagtttaaagctggcaagagtcctataatgactgct
acggatgttgcagctcgtggtttagatgtgaaggacgtgaaatatgtgataaattatgac
ttccctggatcccttgaggactatgttcaccgtattggtcgaacaggaagggctggggca
aaaggaactgcatacactttcttcaccgctgcaaatgctagatttgcaaaggaactcatc
agcatacttgaggaagctggacagaaggtcagtcctgatttggctgcaatggggcgtggt
gctcctcctcccccgtcaggtcatgggggttttcgagatcgtgggaggggtcatggtagt
ggtcgctcatggaactaa
DBGET
integrated database retrieval system
