Quercus lobata (valley oak): 115988589
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Entry
115988589 CDS
T07350
Name
(RefSeq) LOW QUALITY PROTEIN: DNA damage-binding protein cmr1-like
KO
K24755
WD repeat-containing protein 76
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
qlo04121
]
115988589
03036 Chromosome and associated proteins [BR:
qlo03036
]
115988589
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115988589
Ubiquitin system [BR:
qlo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
115988589
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
115988589
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Other MMR factors
115988589
DSBR (double strand breaks repair)
Other DSBR factors
Others
115988589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40
WDR55
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
EIF3I
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
Motif
Other DBs
NCBI-GeneID:
115988589
NCBI-ProteinID:
XP_030968012
LinkDB
All DBs
Position
5:7853792..7865394
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AA seq
463 aa
AA seq
DB search
MASSQKLTEYNRKRLDNIRHNDEMMAPLKVHSKATELSTASSKRQRSSNRTKKVRPVKKK
TKTQTPIATRRSLRAQGMPPDDTVKAISQSNSNTSPMLDLGPLSMRDAYRGTASDKLLME
RILRFSKKLHEEFEFNCGDSIKGVCESGIGSSLELNSLSLNPENIARVVSGRITDLRFFP
CSNATMIVVGNNFGNVGFWDVDSSRYDDEEDDGLHLYDPRHCVISEISIHQHSFSKIFTS
CYLGFIRLMDAEKEVFDLVHSSDDVKCLYFSEGHGGLNIWDERIGKCSTQWNLHEHRINS
IDFNSENYNIMSTSSSNGTACIWDLRSIIVDQPKTLKKEVSHNRAVQSAYFSPSGSSLAT
TSMDNTVGIVTGVNFEHISMIELDNQINSRIAFFRAIWGWDDSYIFIGNRKRGVDAISST
RKRTIFTNPRMPAIPSRFDAHPYKVGMLAGATCWGHVYIWKLG
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcctctcagaaattgacagagtacaatcggaagcgcctcgacaacattcgccac
aacgacgaaatgatggccccccttaaagtccactccaaagctactgagctctccaccgcc
tcttcaaagcgccaaaggtcttcaaatcgtacaaaaaaagtgaggccagtgaagaagaaa
accaaaactcaaaccccaatcgcaacgcgaaggtctttacgcgctcagggaatgcctcca
gatgatactgtcaaagcaatttcccaatccaattccaacacttcgccaatgcttgatttg
gggcctctttctatgagagatgcttatcgaggaaccgcctctgataaactactaatggaa
agaattctccgtttttcgaagaaactccatgaggagtttgagtttaattgtggggattcg
ataaagggtgtgtgtgaaagtgggattgggagtagtttggaattgaattctttgagtctg
aatccggagaatattgcaagagttgtgtcagggaggataacagacttgcggttttttcct
tgtagcaatgccacaatgattgtggttgggaacaattttgggaatgttggcttttgggat
gttgattctagtagatatgatgatgaagaagatgatgggcttcatttgtatgacccacgt
cactgtgtcatttccgaaatttcaattcatcaacattccttttcaaagatctttactagt
tgttatttgggatttatccgattgatggatgctgagaaggaggtttttgatttggtgcat
tcaagtgatgatgtcaagtgcttatattttagtgagggtcatggaggtttgaatatctgg
gatgagaggattggaaaatgctcaacccagtggaatttgcatgaacataggattaactcc
attgattttaactctgaaaactataacatcatgtctactagttcctcaaatggaactgcc
tgcatatgggatttgagaagtattattgtagatcaacccaaaactctgaagaaagaagtt
agtcataatagggctgtgcagtctgcttacttctcaccctccggaagctcccttgcaacg
acaagcatggacaacacagtgggtatagtgactggagttaattttgagcacatttcaatg
attgagcttgataatcagataaactcacggattgcttttttcagagcaatatggggttgg
gatgattcatacattttcatcggcaataggaagagaggagttgatgctatctcctcaact
agaaagagaacaatattcactaacccgcgtatgccagcaattccaagcaggtttgatgca
cacccttacaaagttggcatgcttgcaggagccacatgttggggccatgtttatatatgg
aaattgggctag
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