KEGG   Quercus lobata (valley oak): 115988618
Entry
115988618         CDS       T07350                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
qlo  Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:qlo04812]
    115988618
Cytoskeleton proteins [BR:qlo04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     115988618
SSDB
Motif
Pfam: Katanin_con80 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_SCAP Beta-prop_CAF1B_HIR1 Beta-prop_EML WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_DCAF4 NBCH_WD40 Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_IFT140_1st eIF2A Beta-prop_IFT122_1st Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_RIG_1st Beta-prop_Vps41 Beta-prop_WDR75_2nd Beta-prop_HPS5 WDR54 WD_LRWD1 Beta-prop_VPS8
Other DBs
NCBI-GeneID: 115988618
NCBI-ProteinID: XP_030968042
UniProt: A0A7N2LNC6
LinkDB
Position
5:complement(37022596..37035077)
AA seq 781 aa
MAKRGYKLQEFVAHSTTATVNCVNIGKKACRLFVTGGDDHKVNLWSIGKPNSLMTLCGHT
TPVECVAFDEVLVLAGASNGVIKLWDLEEVKMVRTLSGHRSNNCSAVEFHPFGELFASGS
VDTNLKIWDIRKKGCIHTYKGHTRGITTIKFTPDGRWVVSGGFDNVVKVWDLTAGKLLHD
FKFHQGHIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPESTGVRAITFHPDGR
TLLSGLEDSLKVYSWEPVICHDAVDMGWSTLGDQCINDGKLLACSYFRNSVGVWVADISL
IEPYGSTSRPEQNDNTEQKINLNFQGSHSLEKGGTGLRSTSGLRCVSPDYDTKEIKNIYV
DSTGGNPVASQRAESFNSPKVAPPSDSKDMSCLPSQKQSPSVGLNARSYEKVLDKSFVVP
SIVPRDGADGGDGANSGKESISFSRTKRGMLLRPAHVQRPSNSKIEVERLPEVVESGTLS
NVTCAIDSNFQSKHGSEDGSRESCEDKHSNIKIVTEKLDKILSPRTPSNQESCDESLNCS
KGISPVKMVNGVAVVQGRTRSLVERFEKRERFNSIEDQASTMARVMPEADRTPTLVKGEP
QTSGRDSPSSNDKDVTEDLMQTHELFLSTLRSRLTKLQVVRHFWECNDIKGAISALMKLP
DLSVQADVISVLMEKMEILTLDLFSCLLPVLLGLLDSKVERHASLSLEMLLKLVAVFGPV
ICSTVSAPPAVGVDLHAEQRLECCNQCFIQMQKIQKILPALVRKGGLLAKCAQELNLVLQ
E
NT seq 2346 nt   +upstreamnt  +downstreamnt
atggcgaagcgtggatataagctacaggaatttgtggctcattccaccactgccactgtg
aactgcgtcaatattgggaagaaggcttgtcgtctgtttgtaaccggtggtgatgaccat
aaagttaatctttggagcattgggaaacccaattctttaatgaccttgtgtggacataca
actccagttgaatgtgtagcttttgatgaagttttggtgctggctggagcttctaatggt
gttataaagctatgggatttggaggaagtaaagatggttcgaactcttagcggacacaga
tccaataactgtagtgctgttgaatttcatccatttggagagttgtttgcatctggttca
gtggatactaatctaaagatatgggatattagaaagaaaggatgcattcacacatacaaa
ggacacactcgaggcattactactatcaaattcactcctgacggtcgttgggtagtttct
ggcggattcgataacgttgtcaaggtttgggatctaactgctggaaagctcttgcacgat
tttaaattccatcaaggtcacattcggtccctagatttccatcccctcgagtttctcctg
gccacaggttcagcagacagaacagtgaaattctgggatttggaaacttttgaactaatt
ggatctactagacctgagtctacaggagtacgggcaatcacctttcatcccgatggaagg
accctactttctgggttggaagatagtttgaaggtttactcatgggagcctgtaatttgt
catgatgctgttgatatgggatggtcaacacttggtgaccaatgcattaatgacggaaaa
cttctggcttgctcatactttcgcaattctgttggagtttgggtagcagatatatcgctt
attgagccatatgggtctacttcaagacctgagcaaaatgacaatacagagcagaaaatt
aatcttaatttccagggaagtcattctttagagaaaggaggaactggtctcaggtcaact
tcaggcttgcggtgcgtgtctccagattatgatacaaaagagataaagaacatatacgtg
gattctactggtggaaatcctgttgcttcacagagagctgagtccttcaattctccaaaa
gtggcacccccatcggattcaaaggatatgagttgtctgccatctcagaagcagagtcct
tcagtaggtttgaatgcaagatcttatgaaaaagtgcttgataaatcctttgttgttcct
agcattgtacctagggacggtgctgatggaggagatggggcaaattctggaaaggaatcc
atcagcttttcaaggacaaaacgtggaatgttgctcagaccagctcatgttcagaggcca
tcaaatagtaaaattgaggtcgagaggctgccagaagttgttgaatctggaactttgagc
aatgtgacgtgtgcaatagattcaaacttccaatccaaacatggatctgaagatggatct
agagaatcctgtgaggataaacattctaatatcaagattgttactgaaaagcttgacaaa
attttgtcaccacgaacaccgtctaatcaggaaagctgtgatgaatcccttaattgcagc
aaagggataagccctgttaaaatggtcaatggagttgcagttgtacaaggaaggacccgc
tctctggttgagaggtttgaaaaaagagaaagatttaatagtattgaagatcaagcatct
actatggctcgtgtgatgcctgaagcagatagaactcccactttggtgaaaggagaacct
caaacttctggaagggactcaccatcttcaaatgataaggatgttaccgaagatctcatg
caaactcatgaactattcctaagtacccttcgctctcgcctaacaaaattacaggtggtg
cgacatttttgggagtgcaatgatattaaaggtgctattagtgcactgatgaagcttcca
gatctttctgtgcaagctgatgtgatcagtgttctcatggaaaaaatggagattctcacc
ttagatctgttttcttgcttgcttcctgtgcttttgggcttgctggatagcaaggtagaa
aggcatgcaagtttatcattggagatgctattgaagcttgttgcagtctttggaccagta
atatgctcaaccgtttcagcacctccagcagttggtgttgatcttcatgcagagcaaagg
ctagaatgctgcaaccagtgctttattcagatgcagaagatccagaaaattcttccagct
cttgtaaggaagggtggtttgctggcaaaatgtgctcaggaattgaatctagttcttcaa
gagtaa

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