Quercus lobata (valley oak): 115989429
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Entry
115989429 CDS
T07350
Name
(RefSeq) uncharacterized protein LOC115989429 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qlo03041
]
115989429
Spliceosome [BR:
qlo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
115989429
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
Suf
Motif
Other DBs
NCBI-GeneID:
115989429
NCBI-ProteinID:
XP_030968966
LinkDB
All DBs
Position
5:complement(60610019..60633627)
Genome browser
AA seq
1125 aa
AA seq
DB search
MESKSSVDFDELKLHEVISKGPLDFHEWTSLISEIDKKYPDDIKKICLVYDSFLSEFPLC
YGYWRKYADHKTRLCTVDKVVEIFERAVQSATYSVGVWVDYCTFSMSVFEDSSDIRRLFQ
RGISFVGKDYMCHTLWDKYIEFELSQQQWSSLTHIYIKALRFPTKKLRHYYNCFKKLVAF
WEEEIKCKSISATEKLQKEPVLESKEPICFKDDEISCIIKDLLDPSTGFARSKALQKYLS
VGEWFYKEAHQLDDQIRHFEANIHRSYFHVKPLDSSQLENWHNYLDFVEMHGDFDWAVKL
YERCLIPCANYPEFWIRYVEFMESKGGREIANNALDRSTLIFLKRVPVVHLFKSRFKEQI
GDVCGAQAAFLQCEAESGPNFVENVKMKANMEKRMGNLEAASNVYKEALEMAAMKKMTHT
LSILYVHFSRLKYMSSGSADAAINVLVDGIKNLPHCKLLLEELVNFTMMHEGPRHINVVD
CVIANAISPGPGISQGLNGKDAEDISNLYIEFVDLCGTIHDLRKAWNRHIRLFPNSLRTL
SKPHQQYGDLSSNLLIQLTLQDKKMSPLEKYDTQSDQAPTNISEQKLPSFENNDNQIERV
SVDQTQSREDGNSVQASPKVSEQPQDNTLEPGVPSVDNILEPGVPSVDNILEPGVASVDS
TLEPGVPSVDQTPEPSVPSVDLVQEHVSPEVPEQLRRDTPDPNVSSLNLIQVKQVAPEGS
KQPREDISEPMVSSVDRLGDIANGAESLQSSKECLKEPDVQQQYDHESEQDLKPPLLENL
SLDTQNDRSPKSVPATSHTRESSEDTQMLNRSMLQSSCSASPNASLCSPLGTQASSRTKI
EVVNPSASASHQNPIPTQTIRQPQFTANSGGNWRQRNNSDRVRRNFKFGSRGHSQRKMHQ
HRQEPPQKYPRAEMDAQMPSSQCYSNQSSQNAQVQQSSQGQNQFQEAAAHTNLTTNNAWQ
VQNVQQQSIATASESQLPALPIASQTSQYVIQSDGQYGPVQNNHMWQYYYYQQQQFLLQQ
QQLQLQQQQQYPQQQQYQQQLQQHYHQLQQNPFQQQQQLQQLQQQQLQYNQQQQLSLQQP
YQQQQQQLLYPQQPLQHQEQQPLQQQEEVEQREHQQQNTPSEIQT
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaaagtcttcagttgattttgatgagctcaaacttcatgaagttatttctaaa
ggtccattagattttcatgaatggacatcacttatttcggagattgacaaaaagtatcct
gatgacattaaaaaaatatgtttagtgtatgactccttcttgtccgagttccccttgtgc
tatggatactggaggaagtatgctgatcataagacacgattatgcactgttgacaaggtt
gttgaaatttttgaacgagctgtccagtcagcaacatactctgttggtgtgtgggttgat
tattgtacattcagcatgtcagtttttgaggattcatctgatatccgtagattgtttcag
agaggtatctcttttgttggaaaagattacatgtgccatactttgtgggacaaatacatt
gaatttgagctttctcaacagcagtggagttccctaacacacatttacatcaaagctcta
cgattcccaaccaaaaagttgcgtcattattataattgctttaagaagttggttgctttt
tgggaagaggagataaagtgcaagagcatttctgctactgaaaaattacagaaagaacct
gtgcttgaaagcaaagagccaatatgttttaaggatgatgagatttcttgtatcatcaaa
gacctgctagatccatccactggctttgctagatctaaagcactgcagaaatatctgtct
gtgggagaatggttctataaagaagcacaccaattagatgatcaaattcgtcattttgaa
gctaatattcataggtcttatttccatgtgaagccactagattcgagtcaattggagaat
tggcataactatctggactttgttgagatgcatggggattttgactgggctgttaaactt
tatgagagatgcttgattccatgtgctaattacccggaattttggattcgttatgtggag
tttatggaatctaagggaggaagagaaatagccaataatgctttggaccgatcgacacta
atttttctgaagagagttccagtggtccatcttttcaaatccaggtttaaggagcaaata
ggagatgtgtgtggggcccaggctgcttttcttcaatgcgaggcagaatctggtcccaac
tttgtggaaaatgttaaaatgaaagctaacatggaaaaacgtatgggaaatcttgaagca
gcttccaatgtgtacaaagaagcactagaaatggctgccatgaagaaaatgacgcatact
ctttccattttatatgtgcatttttctcggcttaaatatatgagttctggtagtgcagat
gctgccataaatgtcttggtagatggcatcaaaaatttgcctcactgcaaattactatta
gaggagttggtaaatttcacaatgatgcatgaaggcccaaggcacataaatgtggtagac
tgtgttatagctaatgcaatatctccagggccaggaatatctcagggattaaatgggaaa
gatgcggaggatatttcaaacttatatatagagtttgttgacctctgtggaaccatccat
gacttgaggaaggcatggaaccggcacatacgattatttccaaactctctaaggacactc
tctaagcctcatcagcaatatggagatttgagttctaacctcttgatccaactcacttta
caagacaagaaaatgtcacctttagaaaagtatgatacccagtctgatcaggctccaact
aacatatcagaacagaaacttccatcttttgaaaataatgataatcaaattgagcgggtt
tctgtagaccagacccaatcaagagaagatggcaacagtgtacaggcatctccaaaagtt
tctgagcagccccaagacaatactcttgaaccgggtgtgccttctgtagacaatattctc
gaaccaggtgtgccttctgtagacaatattctcgaaccaggtgtggcttctgtagacagt
actcttgaaccaggtgtgccttctgtagaccagactcccgaaccaagtgtgccatctgta
gatttagtacaagaacacgtatctccagaagttcctgagcagctcagaagagatactcct
gatccaaatgtgtcatctttaaatttgatacaagtaaaacaggtggctccagaaggttcc
aagcagcctagagaagatatttctgaaccaatggtgtcatctgttgacagacttggtgat
attgctaatggagctgaatctctacaatcttcaaaagaatgcttgaaagaacctgatgtt
cagcaacagtatgaccatgagtctgaacaagacctgaagccacctttgttggagaatctc
tccttggacacccagaatgatagatctcctaaatcggttcccgctacatctcacacgcgt
gaatcttctgaagatacccaaatgttgaatagaagcatgctacagagcagttgtagtgct
agtcccaatgcttcattgtgcagcccattaggtactcaagcttcttccagaactaaaatt
gaagtggttaatccctcagcttcagcaagccatcaaaatcctattccaacacagacaatt
aggcagccacagtttactgcaaatagtggtggaaattggcggcaaagaaataattctgat
agagttcgcagaaattttaaatttgggtctcgagggcattcacaacgaaaaatgcatcaa
catcggcaggagcctccacaaaagtacccaagggctgaaatggatgctcaaatgccttca
agtcaatgttattccaatcagtcttctcaaaatgcacaagttcagcaaagcagtcaagga
caaaatcagtttcaagaagcagctgctcatactaatttaacaactaacaatgcctggcaa
gtgcaaaatgtgcagcaacagagtattgccactgcatccgagtctcagctgcctgctcta
cctattgcttcgcagacttctcagtatgtaatacaaagtgatgggcagtatgggcctgtt
cagaataatcatatgtggcaatattattactaccagcaacagcagtttcttctacaacaa
caacaattgcaactgcaacagcagcagcaatatccccagcaacagcagtatcagcagcaa
ctgcaacaacattaccatcaactgcaacaaaatccctttcagcagcagcagcagttgcaa
cagcttcagcaacaacagttacaatacaatcagcagcagcagctttcactgcaacaacct
tatcagcagcaacaacagcaactgctgtacccacaacagcctctacaacatcaagagcag
cagccattgcaacaacaagaagaggtagaacagagagaacaccagcaacagaatactcca
tcagagattcagacatag
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integrated database retrieval system
