KEGG   Quercus lobata (valley oak): 115989626
Entry
115989626         CDS       T07350                                 
Name
(RefSeq) splicing factor U2af large subunit B-like isoform X1
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115989626
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:qlo03041]
    115989626
Spliceosome [BR:qlo03041]
 Complex A
  U2 snRNP components
   U2 related factors
    115989626
 Complex B
    115989626
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_occluded
Other DBs
NCBI-GeneID: 115989626
NCBI-ProteinID: XP_030969278
UniProt: A0A7N2LNH5
LinkDB
Position
5:complement(39678251..39688189)
AA seq 545 aa
MSDYASIDNEERREPESEPGRSSPFDARHSHHKQNSRGSDRERLRVRERNRDRETDGDRH
HRDYRDRSMRDDKGRGKYDDYDRHQSSHYDRHRSYGGDRERRHRHRSRSSSRDGSKNESR
SDSRSRSRSKSKRTSGFDMAPSNADVLHGAAVPVQPPVVSQSMPGIVQNMLPFGTSQLGA
IPLMPIQAMTQQATRHARRVYVGGLPPIANEQTIATFFSSVMAAIGGNSSGQGDAVVNVY
INHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPALAAALGPSQPSPHLN
LSAVGLTPGLIGGAEGPDRIFVGGLPYYFTEAQIRELLQAFGPLRGFDLVKDKDTGVSKG
YGFCVYQDPAVTDIACAALTGLKMGDKILTVRRATASLGQSKTEQEMILAQAQQHITMHK
MALIAGGLNLPGVAPVANAEPATKVLCLTEAITVEQLRNDQEYEEISEDMRDECSKFGTL
VGIIIPRPDQNGDWIPGVGKVFLEYSDISGCANARNALNGRKFGGNVVSAVYYPEDKYYI
KDYGA
NT seq 1638 nt   +upstreamnt  +downstreamnt
atgtccgattacgcctctattgacaacgaagaaagacgcgaacccgaatccgaacccggt
cgctcttctcctttcgatgctcgccattcgcatcacaagcaaaattcgcgtggatcagat
cgtgagaggttgagggttagagagcgaaatcgggatagggaaacagatggagaccgtcat
cacagggactatagggatagaagtatgagggatgataaaggaaggggcaagtatgatgat
tatgaccgtcatcaaagcagccattatgacaggcaccgttcttatggcggagacagagag
aggaggcatagacatagatcacgatcctcttctagggatggatctaagaacgaatccaga
tcagactctcgttctcgttctcgatcaaaaagcaaacgaacaagtggttttgacatggca
ccatctaatgccgatgtgctgcatggtgctgctgttccagtgcaaccaccagttgtttct
caatcaatgccaggaatcgtacagaacatgttaccttttgggacatcacagctgggagct
attcccctaatgccaatccaagccatgacccagcaggctacaaggcatgcacgacgggta
tatgttggtgggcttcctccaattgcaaatgagcagacaattgcaactttctttagctct
gtcatggcagcaattggtggaaattcttctggtcaaggtgatgcagtagtcaatgtctac
attaatcatgagaagaagtttgcatttgtggagatgagaactgttgaagaagcaagtaat
gcgatggcattagatgggattatatttgagggggttgctgtgagggtgcgaaggcctaca
gactacaatcctgcattagctgcagcacttggtcctagccaaccaagtcctcatctcaac
ttatctgctgttgggctcacaccaggtttaattggtggagcagagggtcctgatcgtatc
tttgttggtggactaccatactactttactgaagcacagataagagaattgctacaggcc
tttggacctctccgtgggttcgatcttgttaaggataaagacacaggagtctctaaagga
tatggtttctgcgtctatcaggatccagctgtgacagacattgcttgtgctgctcttact
ggcttgaaaatgggtgataaaatcctaacggtcaggcgtgctactgccagcttggggcag
tccaaaacagaacaggaaatgatcttagcacaggcacaacagcatataactatgcacaaa
atggctttgatagctggtggtttgaatcttcctggggtagcaccagtagcaaatgcagaa
cctgcaactaaagttttatgcttgactgaggcaattactgtggagcaactgaggaatgat
caagagtatgaagaaatctccgaagacatgcgggatgaatgcagcaaatttggaactttg
gtgggcatcattattcctcgtccagatcaaaatggagactggatcccaggtgttggaaag
gtgttcttggagtattctgatatctctggttgtgctaatgcaaggaatgcactgaatggg
aggaaatttggaggcaatgtagtgagtgccgtttattatccagaagacaaatattatatc
aaagattatggggcttaa

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