Quercus lobata (valley oak): 115989721 Help Entry 115989721         CDS       T07350                                  Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism qlo  Quercus lobata (valley oak) Pathway qlo03040   Spliceosome Brite KEGG Orthology (KO) [BR:qlo00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     115989721  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:qlo03019]     115989721    03041 Spliceosome [BR:qlo03041]     115989721 Messenger RNA biogenesis [BR:qlo03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      115989721 Spliceosome [BR:qlo03041]  Complex B   Other components    Prp19-related factors     115989721  Complex C     115989721 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 Suf TPR_15 TPR_19 NRDE-2 Motif Other DBs NCBI-GeneID:  115989721 NCBI-ProteinID:  XP_030969408 UniProt:  A0A7N2LSU0 LinkDB All DBs Position 5:complement(81847245..81852075) Genome browser AA seq 930 aa AA seqDB search MEKEFYPSQDDLLYEEEVLRNPFSLKLWWRYLIARSDAAFKKRFIIYERALKALPGSYKL WHAYLRERLDLVRNLPISHSQYKTLNNTFERALVTMHKMPRIWIMYLQTLTHQKLVTQTR RTFDRALCALPVTQHERVWEPYLIFVSQKGVPIETSLRVYRRYLKYDPSHIEEFIEFLVN SSLWQEASERLASVLNDDGFYSIKGKTKHRLWLELCDLLTKHANEVSGLNVDAIIRGGIR KFTDEVGRLWTSLAEYYIRRNLHEKARDVFEEGIMSVVTVRDFSVIFDSYTQFEESMLTF KIESMSSSDEEDEEEEGEGGKENGVEGKRMDDEDEDEDVRLDVNLSMAKLEKKILNGFWL HDDKDVDLRIARLDYLINRRPELANSVLLRQNPHNVEQWHRRVKLFEGDPKKQILTYTEA VRTIDPMKAVGKPHTLWVNFARLYEKHSDLVNARVIFDKAVQVNYKAVDHLASVWCEWAE MELRHQNFKGALELMRRATAEPSVEVKRRVAADGNEPVQIKLYRSLKLWTFYVDLEESLG TLESTRTVYERILDLRIATPQIILNYAFLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWV TYLSKFVNRYGKAKLERARELFEHAVEMAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQ ATKAVPNNEKLSMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELEKS LGEIDRARAVYVFASQFADPRSDVDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQT HFILPEYLMQKDQRLNLDDARDKLKQAGVAEDEMAALERQLAPVVDNGAAKDNNRRVGFV SAGVESQSEGGIKVTANNEDIELPEESDSDDDDKVEIAQKDVPSAVFGGLVRKRDEADND AEAQDATATKEKDGDSRLGALERIKRLKKA NT seq 2793 nt NT seq  +upstreamnt  +downstreamnt atggagaaagagttctacccatcccaagacgacctcctctacgaagaagaagtcctccgc aaccccttcagcctcaagctctggtggcgctacctcatcgctcgatccgacgccgcattc aaaaagcgcttcatcatctacgagcgagctctcaaggctctcccaggcagctacaagcta tggcacgcttatctccgcgagcgactcgacctcgttcgaaaccttcccatctctcactcc caatacaaaaccctcaacaacactttcgagcgagccctggtcactatgcacaaaatgcct cggatttggatcatgtacctccaaaccctaactcaccagaagctcgtcacccagactcgc cgcactttcgatcgagctctgtgcgctttgccggtcactcagcacgaacgggtttgggag ccctatttgatcttcgtgagccagaagggtgtcccaatcgaaacctcgctcagggtttat cgcaggtatttgaaatacgacccttctcatattgaggaattcattgaatttttagttaat tctagtctttggcaagaggcttcggaaagattagcttcagtgttgaatgatgatgggttt tattcgattaaagggaagactaagcataggttgtggttagagctgtgtgatttgttgact aagcatgctaatgaggtttcggggttgaatgtggatgcaattattaggggtgggattagg aagtttacggatgaggtagggcggctgtggacctcgcttgcagagtattatattaggcgt aatttgcacgagaaggcgagggatgtgtttgaggaggggattatgagtgtggttactgtt agagattttagtgtaatttttgactcgtatacgcagtttgaagagagtatgttaacattt aagatagagagtatgagttcgagtgatgaggaggatgaggaggaggagggagagggtgga aaagaaaacggtgttgaggggaagagaatggatgatgaagatgaagatgaagatgttcgg ttagatgtgaatttatcgatggctaagcttgagaagaagattcttaatgggttttggtta cacgatgataaggatgtggatttgaggattgctcgattggattatctcataaataggaga ccggagttggctaatagtgtgttgttacgacagaatcctcataatgtggaacagtggcat cgaagggtgaagttgtttgagggtgatcccaagaagcagattttgacttacactgaggca gtgaggacaattgatcctatgaaagctgtggggaaacctcatacattgtgggttaacttt gctaggctttatgagaagcacagtgatcttgtcaatgccagagttatattcgataaagca gttcaagtcaactacaaggctgtggatcatctggctagtgtttggtgtgagtgggcagag atggaattgaggcatcaaaatttcaaaggagcattagagttgatgaggcgagccacagca gagccatcggtggaggtcaaacgaagagtggctgctgatgggaatgaaccagtgcagatt aagctgtacagatccttgaaactctggaccttctacgtcgacttagaagagagcctgggt accttggagtccacaaggacagtgtatgagcggatattggatctaagaatagccacgcct caaattattctcaattatgcatttctattggaggaacataaatactttgaagatgcattc aaggtatatgaaagaggtgtgaagatttttaagtatccacatgtcaaagacatatgggtc acatacctctcaaagttcgtaaacagatacgggaaggcaaaacttgaacgggcaagagag ctgtttgaacatgctgttgaaatggcacctgctgatgcagtgaagcctttgtatcttcaa tatgcaaagctggaggaggattatggtctggccaagcgagctatgaaggtctatgatcaa gcaactaaggctgttccaaacaatgagaaattgagcatgtatgaaatttatattgctcga gcagcagagatatttggcgtcccaaaaactagggaaatatacgagcaagcaatagagtct ggtcttccagacaaagatgtgaagaccatgtgcttgaagtatgctgagcttgagaagagt ctaggagaaattgatcgtgctcgtgcagtatatgtatttgcgtcacaatttgcagatcca cgatctgatgtggatttctggaataagtggcatgagtttgaggtgcaacatggaaatgaa gacactttcagagaaatgcttcgaattaaaagaagtgtttctgcaagctatagccagacg cactttatcttgcctgagtatctgatgcaaaaggatcagagattgaaccttgatgatgca agagacaaattgaaacaggctggggttgctgaagatgaaatggctgctcttgaaaggcag ttagctcctgtagttgacaatggtgctgctaaagataacaacagaagagttggctttgtc agtgcaggtgtggaatcacaatctgaaggaggtattaaagttactgcaaataatgaagac attgagctaccagaagaaagtgattcagatgatgatgataaggttgaaatagcccaaaaa gatgttccttcagctgttttcggaggtttggttcgtaagagagatgaggccgacaatgat gcagaagcacaagatgccactgctactaaagagaaggatggtgatagccgccttggtgcc ctagagagaataaagagactaaagaaagcgtga

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