Quercus lobata (valley oak): 115989805
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Entry
115989805 CDS
T07350
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115989805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qlo03041
]
115989805
Spliceosome [BR:
qlo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
115989805
Complex C
U5 SnRNP specific factors
115989805
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
115989805
NCBI-ProteinID:
XP_030969544
LinkDB
All DBs
Position
5:31381971..31396942
Genome browser
AA seq
2348 aa
AA seq
DB search
MWNSGQIAPPGTTGSSIPPPPAAQPSYTVLPSPAEAEARLEEKARKWQQLNSKRYSDKRK
FGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPW
EQVRDVKVLYHISGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFD
DEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLS
LPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDE
DWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMIMYIKTEDPDLPAFY
YDPLIHPITSINKDRHEKKIRDDEDDDDFFLPEGVEPLLRDTQLYTDTTAAGISLLFAPR
PFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKK
KHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKT
LTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQLT
GMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLE
RWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTI
LQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIKRGATVDK
TVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPP
LSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQR
AFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPP
LLVYKWCQGINNLQGVWDTSDGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYV
TAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPN
EFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYN
NKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSM
CGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQIL
MSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMP
SRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNL
YRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRH
TLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHT
LFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVY
VGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIET
VQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAEPKDVFDQKASNKYWIDVQLRW
GDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLQQ
AMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRV
TIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAAL
VRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILK
ATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIW
PSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAE
IEKQAKEASQLTAVTTKTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVN
HIYVNSEDIKETGYTYIMPKNILKKFICMADLRTQIAGYLYGISPPDNPQVKEIRCIAMP
PQWGTHQQVNLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHAKILENNKQWDG
EKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFL
GFYMMPDNGPWNYNFMGVKHAPSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGETFAE
GDREDTFT
NT seq
7047 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacagcggccagattgcgccgccggggaccactggctcgtccattcctccgccg
ccggcggcgcagccatcgtacaccgtgctgccttcgccggccgaggccgaggcgcggctc
gaagagaaggcgaggaaatggcagcagctcaattcgaagcggtacagcgacaagcggaag
ttcgggttcgtcgagacgcagaaggaggacatgcctcctgagcacgtcaggaagatcatt
agagaccatggggacatgtcctctaagaaatatcgtcatgataaacgtgtctatcttgga
gcccttaaattcattccacatgcagtttacaagcttcttgagaatatgcctatgccatgg
gagcaggttcgagatgtgaaggttttgtaccatatttctggggctattacatttgtgaac
gaaataccatgggttgttgaacctatatatttggctcagtggggtacaatgtggatcatg
atgcgaagggagaagagggatcgtcggcatttcaagagaatgcggtttccaccatttgat
gatgaggaacctccattggactatgctgataatcttctagatgttgatcctctggagcct
atccaattagagttggatgaagaagaggattctgctgtatatacttggttttatgaccat
aagcctcttgtgaaaacaaagcttataaatggtccaagttatcggaaatggcatctctct
cttcctatcatggcaactcttcatcggcttgcaggacagttgctttctgacttaattgac
cgcaactatttctacttgtttgacatggagtctttttttacagccaaagcattgaatatg
tgtatacctggtggacctaaatttgagcctttgtatcgtgacatggagaaaggtgatgag
gattggaatgagttcaatgatattaacaagctaattattcgatcacctctccggacagaa
tacagaattgcattccctcatctctacaacaatagaccaaggaaagtaaagctgtgtgtg
tatcacactcccatgatcatgtacataaaaaccgaggatcctgatttacctgctttttat
tatgatcctttaatacacccaataactagcattaacaaggatcggcatgaaaagaaaatt
cgtgatgatgaggatgatgatgatttcttcttgccggaaggagtggaacctctgttgagg
gatactcaactttatactgacaccacagctgctggaatttccttattgtttgccccacgc
ccttttaacatgagatctggtcggatgagacgtgcagaagacataccccttgtgtcggag
tggtataaagagcattgtcctccatcctatccggttaaagttcgagtcagctatcaaaaa
ttgctaaaatgctttgtgttgaatgaactgcatcacagacctcctaaggctcaaaagaag
aagcacttgttccgatctctgcaagcaactaagtttttccaaaccacagaacttgattgg
gctgaagctggtcttcaagtttgtaagcagggctataacatgctaaatctgctgatacat
aggaaaaatttaaattacctccaccttgattataatttcaatctgaagccggtgaagacc
ctcactacaaaagagcgcaagaagtcacgttttggtaatgctttccatctgtgtcgtgag
attctgcgcttgacaaagcttgtggttgatgccaatatccagtttcgcctgggtaatgtg
gatgccttccaattggccgatggcttgcaatatacattttctcatgttggtcaactgacc
ggcatgtaccgttacaaatataggcttatgcggcagatcagaatgtgcaaagacttgaaa
cacttgatctactatcggttcaatactggtccagttgggaaaggacctggatgcgggttt
tgggcaccaatgtggcgagtttggttgttctttctacgtggtatagtgcctctcctggaa
cggtggttagggaatttacttgcacgtcaatttgaagggcgccattcgaaaggagtggct
aagacagttactaagcaacgtgttgaaagccactttgatttggagctaagagcagctgtt
atgcatgatgttcttgatgctatgccagagggcattaagcagaataaagccagaacaata
ttgcagcatctcagtgaggcgtggcgatgttggaaagcaaatattccctggaaggttcct
ggtttgccagttcccattgagaacatgattcttcgttatgttaagtcaaaagctgactgg
tggacaaatgttgcccactataatcgtgagcgtataaaaagaggagccactgtcgataag
acagtttgtcggaagaatcttggaagactgactcgtctttggttgaaggcagaacaggaa
cgacaacacaactacttgaaagatggtccatatgtcacaccagaagaagcagttgccatt
tacactacgacagtgcattggttggagtcaagaaagttctctcccatcccgttccctcca
ttatcatataagcatgacacaaaacttcttatccttgctctggagcggctgaaggaatct
tatagtgtagctgtgaggttaaaccagcttcaaagagaagagttgggtcttattgaacaa
gcctatgataatccacatgaagcactgtcacgaatcaagcgtcacctgctcactcagcgt
gcattcaaagaagttggcatagaatttatggatttgtacagttatctcattccagtttat
gagattgagcctcttgagaagattacagatgcatatcttgatcaatatttatggtatgaa
ggtgacaaacgccatctttttccaaattggataaagcctgcagattcagagcctccccca
cttttggtttataaatggtgtcagggtataaacaatttacaaggtgtatgggacacaagt
gatggccaatgtgtggtgatgcttcaaacaaagtttgaaaagttctttgagaagattgac
ttgacaatgttaaacaggctcttgcgattggttcttgaccacaacattgctgattatgtc
accgcaaagaacaatgttgtgttgtcttacaaggatatgagtcacacaaactcatatggt
cttatccgtggtctccagtttgcttcttttgttgtacaatattacggacttgtgctggat
ctcttgctccttggattgactcgagctagtgagattgctgggcccccacagatgcctaat
gagttcattacttattgggacacaaaagttgagacacggcaccctattcggctttattct
cgttacatagacagggtccacatattgttccgcttcacccacgaagaggctcgagacctt
atccagcggtatcttactgagcatcctgatcctaacaatgaaaatatggttggatataac
aacaagaagtgctggcctagagatgcaagaatgaggctcatgaaacacgatgtaaatctt
gggaggagtgttttctgggatatgaagaaccgtcttcctcgaagcatcactacattggag
tgggagaacagttttgtttctgtatacagcaaggacaatccaaacttgcttttcagcatg
tgtgggtttgaagttcggattcttcctaaaataaggatgacccaagaagcattcagtaat
acaagagatggtgtttggaatctccagaatgagcagaccaaagaacggactgcagttgct
ttcttgcgggttgatgatgaacacatgaaggtgtttgagaatcgtgtgaggcagattctt
atgtcttcaggatccacaacatttacaaaaattgtcaataaatggaatacagccttgata
ggtctcatgacttatttccgtgaagctactgtgcatactcaagagctgttagatttgctg
gttaaatgtgaaaataaaatccaaacccgtattaagattgggttgaactcaaagatgcct
agcaggttccctcctgtcattttctacactccaaaggaaatcggaggacttggcatgctt
tctatgggtcatatattgattccacaaagtgacctccgttacagccagcagacagatgtt
ggtgtaacccactttaggagtggaatgagccatgaagaggaccagctgattccaaatctt
tatcgatatatacagccatgggagagcgagttcatagattcacagcgtgtttgggcagaa
tatgcattgaagaggcaggaagctcaggctcaaaataggcgtttgacccttgaagatttg
gaagattcatgggacaggggcatacctcgtataaacactttgtttcagaaggaccgacac
acattggcatatgacaaaggatggagggtgcgtactgacttcaaacagtaccaagtttta
aaacagaaccctttctggtggacacaccagaggcatgatgggaaactttggaacttgaac
aattatcgaactgatgtcattcaagctttgggtggtgttgagggaattcttgagcatacc
ttattcaaaggaacatactttccaacttgggaaggtctcttctgggaaaaggcatctggt
tttgaggaatcaatgaagtataagaagctgacaaatgctcagagatctggtctcaaccaa
atccctaaccgtaggtttacgctttggtggtcacctacgataaatagagcaaatgtgtac
gtgggttttcaagtccaattggatctaactggaatcttcatgcatgggaagatccctacc
ttgaagatatcactgattcaaatattccgtgcgcatttgtggcaaaaaatccatgagagt
gttgtcatggatctttgtcaagttttggatcaggagttggatgctttggaaattgaaact
gtgcagaaggaaacaatccatccaagaaagagttacaaaatgaacagctcttgtgcagac
attcttctctttgctgcacatagatggccgatgtcaaaacctagtcttgtagctgaacca
aaggatgtgtttgatcagaaagcaagcaataagtactggatagacgtgcagctccgctgg
ggagattatgactctcatgatattgagcgttacactcgggccaaatttatggattataca
acagacaatatgtctatatatccatctcctactggtgtgatgattggaattgatttggca
tacaacttgcattctgcatttggtaattggtttcctgggtcaaagcctctgcttcagcag
gctatgaataagatcatgaagtcaaatccagctttatatgtcttgagggagcggataagg
aaaggtttacagttgtattcttctgagcccactgaaccatatttgtcatctcagaattat
ggagagatcttcagcaatcaaataatttggtttgttgatgacacaaatgtgtatcgtgtt
actatccataagacatttgagggaaatcttacaactaaacccatcaatggtgccatcttt
atattcaatccaaggactggacagctgttcctgaaggtcatccacacaagtgtgtgggca
ggacaaaagcgtcttggtcagttggccaagtggaaaacagcagaagaagttgctgctcta
gttcggtctttgcctgttgaggaacagccaaaacaaattattgtgactcgtaagggaatg
ctggatccattggaggttcacttgctggatttcccgaacatagttatcaaaggaagtgag
ctgcagcttccattccaagcatgcttgaagattgagaaatttggtgatctgattttgaag
gccacagagccgcaaatggtccttttcaacatttatgatgattggttgaaaagtatttcc
tcatacactgcattctcccgactcattctgatcctgcgtgcgctacatgtgaacaatgag
aaggcaaagatgttactaaagcctgacaaaacaatcattactgagccacaccacatctgg
ccatctctcactgatgatcaatggatgaaggttgaggttgctcttagagatctcatactg
tcggattatgccaagaagaacaatgtgaatacgtcagctctgacacagtctgagatccgt
gatattatacttggagctgagattactcctccttctcaacagagacaacagattgctgag
attgagaaacaggcgaaagaagcaagtcagctgaccgcagttacaacaaagactacaaat
gtgcatggtgatgagcttattgtaaccaccacaagtccatatgagcaagctgcgtttggg
tctaaaactgattggcgtgtgagagcaatatctgcaacaaacctctatcttcgtgtcaat
catatttacgtgaattcagaggatataaaggaaacaggatatacctatatcatgccaaag
aacattttgaagaagtttatctgcatggcagatctgcggacacaaattgctggttacttg
tatggtataagtccccctgacaaccctcaggttaaggagatccgctgtattgccatgcca
ccacagtggggaacccatcagcaagtcaatcttccatcagctctcccagagcatgatttc
ctgaatgatttggagcctttgggatggatgcatacacagcctaatgaacttccccagtta
tcaccacaggatctcacaagtcatgctaagatcctggaaaacaacaagcaatgggatgga
gagaagtgcattattttgacctgcagtttcactccaggttcctgctccctaactgcatat
aagctgacaccatcagggtatgagtggggccgtgtcaacaaggacactggaagcaatcct
catggttaccttcccactcattatgagaaggtccaaatgcttctcagtgaccgtttcctt
ggtttctacatgatgccggataatggtccatggaattacaacttcatgggggtgaaacat
gcacctagtatgaagtatggggtcaagctcgggacaccacgtgagtattatcatgaagac
cacaggccaactcatttcctggagttcagcaacttggaggagggagagacttttgctgag
ggagaccgtgaggatacctttacatag
DBGET
integrated database retrieval system
