Quercus lobata (valley oak): 115990430
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Entry
115990430 CDS
T07350
Name
(RefSeq) exosome complex component CSL4-like isoform X1
KO
K07573
exosome complex component CSL4
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115990430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115990430
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
115990430
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
115990430
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Motif
Pfam:
EXOSC1
ECR1_N
ECR1_N_2
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
115990430
NCBI-ProteinID:
XP_030970125
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Position
1:42017978..42041348
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AA seq
199 aa
AA seq
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MEEAAAAEVVVVTPGEVLGKASQVRAGRGAYVAPHNNLVYASLTGFRRTLSPPPNSPDQR
PTVEVTGHKAHGAVPEPGSVVIARVTRVTARVASADIMCVGPKSVREKFTGSIRQQDVRA
TEIDKVDMHLSFRPGDIIRAVVLSLGDARAYYLSTAKNELGVVSAESTAGETMVPISWTE
MQCPLTGQIEQRKVAKIGG
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggcagcggcggcggaggtggtggtggtgacgccaggagaagtgctgggaaaa
gcaagccaagtgagagcagggagaggcgcctacgtggctcctcacaacaacttggtctac
gcctccctcactggtttccgccgcaccctatcccctccccctaactcccccgaccagaga
cccactgtggaagtaactggtcacaaagcccatggtgcggttcccgaacccggatcggtt
gttattgcaagagttactagagtgacagccagagtggcttcagctgatattatgtgtgtc
ggtcccaagtctgttcgagaaaaatttactggatcaatcaggcagcaagatgttagagca
actgagattgataaagtggatatgcacttatcttttcgccccggtgacattattagagct
gttgtgctgtcccttggagatgcacgggcttattatctatcaactgcaaagaatgaactg
ggtgttgtgtctgcggagagcacagcaggtgaaacaatggttccaataagttggaccgag
atgcagtgcccattaactggtcaaattgagcaaagaaaggttgctaagattggaggttga
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