Quercus lobata (valley oak): 115990531
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Entry
115990531 CDS
T07350
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qlo03041
]
115990531
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115990531
Spliceosome [BR:
qlo03041
]
Complex C
Other components
Complex C specific factors
115990531
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GFIT
Motif
Pfam:
Helicase_C
AAA_22
DEAD
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
115990531
NCBI-ProteinID:
XP_030970215
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Position
5:44160414..44172800
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AA seq
424 aa
AA seq
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MSHFWKPGTEKPRMVDDEEGGVLFLSTAASSSSSSGFGYGSMEKQRQRLPVYKYRTAILY
LVETHATSVIVGETVSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQSVAARVAEEMG
VKLGEEVGYTIRFEDLTNTNTTMIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSIST
DILLGLLKKIQRRRPELRLIISSATIEAKSMSAFFQASKRRRGLEGEELRPRMEPAILSV
EGRGFNVQIHFAEEPVSDYVQGVVSTVLSIHNQEPMGDILVFLTGQDDIDTAVKLLNEEA
QSNGKKSSGLIVLPLYSGLSRAEQELIFTPTPRGKRKVVISTNIAETSLTLEGIVYVVDS
GFSKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRYLSSRQYFTLLCFSFA
VRNS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcatttctggaagcccggcaccgagaagcctcgcatggtcgacgacgaagaaggt
ggagttctgttcctgtccaccgctgcctcttcctcttcctcttcgggattcggctatgga
agcatggaaaagcagaggcagaggcttcccgtgtataaataccgcaccgcgattctgtat
ttggttgaaactcacgccacttctgttatcgttggcgagactgttagtggcaaaaccact
cagattcctcagtaccttaaagaagcaggttgggctgatggtgggcgtgttattgcttgc
actcaacctaggcgtttggctgtccagtcagttgctgcaagggtggctgaagagatgggg
gtcaagcttggagaggaagttggctacactattcgatttgaagatcttacaaatacaaat
acaaccatgataaagtttcttacggatggggtgttactgagggaaatgatggatgatcct
cttttgaccaagtatagtgtcataatggttgatgaggctcatgaaaggtccatttcaact
gacatattacttggtctactaaaaaagattcaacgccgtcgacctgagctgcgcctgatt
atttcctctgctacaattgaagcaaaatcaatgtctgctttcttccaagccagcaaaagg
cgtcgaggattagaaggtgaggagcttagaccaaggatggaacctgcgatcctatcagtt
gagggtagagggtttaatgtacaaattcattttgctgaggagcctgtttcggactatgtt
cagggtgttgtttcaacggtattatcaattcataatcaggaacccatgggtgatattctg
gtatttcttactggtcaagatgatattgatactgctgtcaagttgcttaatgaggaagct
caaagcaatggaaagaaatcttcaggattaattgttttgcctttgtactcgggactctca
cgtgcagagcaggagttgatttttactccaactcctagagggaaaaggaaagtagtgata
tcaacaaatatagcagagacatcgttaactttggagggaattgtgtatgttgttgatagt
gggttctcaaaacagcgattctacaatccgatttcagatattgagaatctggtagtggca
cctatatccaaggcatctgctagacaaagggcgggtagagctggacgagttcgacctggg
aagtgttacaggtacctatcttcaaggcaatattttaccttgttatgcttcagttttgca
gttaggaattcctaa
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