Quercus lobata (valley oak): 115991207
Help
Entry
115991207 CDS
T07350
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
115991207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115991207
03009 Ribosome biogenesis [BR:
qlo03009
]
115991207
04131 Membrane trafficking [BR:
qlo04131
]
115991207
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
qlo04147
]
115991207
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
115991207
Ribosome biogenesis [BR:
qlo03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
115991207
Membrane trafficking [BR:
qlo04131
]
SNARE
SNARE associated proteins
Others
115991207
Autophagy
Aggrephagy
Other aggrephagy associated proteins
115991207
Exosome [BR:
qlo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
115991207
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
RuvB_N
CDC48_2
AAA_5
AAA_16
AAA_22
AAA_33
NPHP3_N
AAA_2
RNA_helicase
Mg_chelatase
TIP49
nSTAND3
Parvo_NS1
ATPase_2
AAA_14
ABC_tran
AAA_17
AAA_18
AAA_28
NB-ARC
TsaE
AAA_7
AAA_19
Sigma54_activat
ResIII
IstB_IS21
AAA_24
nSTAND_NTPase5
Zeta_toxin
SLFN-g3_helicase
AAA_11
DUF815
Zot
Motif
Other DBs
NCBI-GeneID:
115991207
NCBI-ProteinID:
XP_030970810
LinkDB
All DBs
Position
5:78398943..78402516
Genome browser
AA seq
567 aa
AA seq
DB search
MHPNTMEKLQFFRGDTVLLKGKKRRDTVCIVLADEQCEEPKIRMNKVVRSNLRVRLGDVI
SIHQCPDVKYGKRVHILPIDDTIEGVSGNLFDVFLKPYFLESYRPVRKGDLFLVRGGMRS
VEFKVIETDPGEYCVVAPDTEIFCEGDPIKREDEERLNEVGYDDVGGVRKQMAQIRELVE
LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAIANETGAFFFLINGPEIMSKLAGE
SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHV
IVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLADDVDLERVSK
DTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQSALGTSNP
SALRETVVEVPNVSWEDVGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPG
CGKTLLAKVIANECQAVASAVNAKPNSCGTLSTGAAPSNLEIQERNSPMIMSNYWKYPPN
GPSLEIVWKWGFNQMQWILVQQLERER
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgcaccctaatacaatggaaaagcttcagtttttccgtggggacactgttttacttaag
ggaaagaagcgaagagacacagtctgtattgttcttgctgatgaacaatgtgaagaacca
aaaatcagaatgaacaaagttgttcgatcaaatcttagagttcgtcttggagatgttata
tccatccatcagtgccctgatgtgaagtatgggaaacgagttcatatccttccgattgat
gatacaattgagggtgtcagtggcaacttgtttgatgtatttttgaagccatatttcttg
gaatcttaccgacctgttaggaagggtgacctttttctagtcaggggtggaatgagaagt
gttgaattcaaggttatagagacagaccctggtgagtattgtgttgttgcaccagatact
gaaatcttctgtgagggagatcctatcaaacgtgaagatgaggagcgattgaatgaagtg
ggatatgatgatgttggtggtgttaggaagcaaatggctcagatccgggagctagtagaa
cttcctcttagacacccacagctcttcaaatcaattggtgtgaaacccccaaaaggtatc
ttgctttatgggccacctgggtctggaaaaactctgattgcaagagctatagctaatgag
acaggtgcattcttctttttgattaatggacctgaaataatgtcaaaactagctggtgag
tctgaaagcaacttgagaaaggcatttgaggaagcggaaaagaatgccccgtctattata
tttattgatgagatagattcaattgccccaaagagggaaaagacgaatggtgaagtggag
aggcgtattgtttcccaactcctgacattaatggatggcctcaagtcccgagcacatgtg
attgtcatgggagctaccaataggcctaatagtattgatcctgcactgaggagatttggg
agatttgatcgtgaaattgacattggtgtaccagatgaggttggaagattggaagttctt
agaatccacacaaagaatatgaaacttgcagatgatgttgatcttgaaagagtttcaaaa
gatacccatggttatgttggtgcggatcttgctgctctttgcacagaggctgctcttcag
tgtattcgggagaaaatggatgtcattgacttagaggatgaaactattgatgctgaggtg
ttaaattcaatggctgtgactaatgaacacttccaatctgcattggggacttcaaatccg
tcagcactacgtgaaacagttgtggaggttcctaatgtttcctgggaagatgtgggaggt
ttggacaacgttaaaagagagcttcaggagactgtccaatacccagtggagcatcctgag
aagtttgagaaatttggcatgtcaccttctaaaggtgttctcttttatgggcctcctggc
tgtggtaaaacactacttgcaaaggtaattgccaatgaatgccaggcagttgcttctgct
gtaaatgctaaaccaaattcatgtggtaccctttccacaggtgctgctcccagtaatctt
gagattcaagaaagaaattcaccaatgattatgtcaaactattggaaatatcctccaaat
ggaccttctttagaaattgtttggaagtggggattcaatcagatgcagtggatattagtg
cagcaacttgaacgtgagaggtag
DBGET
integrated database retrieval system
