Quercus lobata (valley oak): 115991455
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Entry
115991455 CDS
T07350
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115991455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115991455
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115991455
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115991455
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
115991455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf_UBZ
Pcf11_C
zf-C2H2_2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
115991455
NCBI-ProteinID:
XP_030971010
UniProt:
A0A7N2R5J9
LinkDB
All DBs
Position
5:74609231..74617914
Genome browser
AA seq
1023 aa
AA seq
DB search
MDSEKLSSVNLRATTATATTEKPPPPPILERFRALLKQRDEELRASAGGEVDDDDEIDES
FVVPPPSSEEIVELYEMFLGELTFNSKPVITDLTIIAGEQKEHGKGIADAICARIIEVPV
EQKLPSLYLLDSIVKNIGRDYVRHFSPRLPEVFCEAYRQVQPNQYNSMRHLFGTWSAVFP
PSVLNKIEAQLQFSPSVNNQSSVLATMRASESPRPTHGIHVNPKYLRQLEHSTLDTNIRH
PRGTSALKMYGQKPAIPYDEFDPGHAEVVSSQVGAPRLSSTGDAGHTPFAFGANKAHPPS
TARLARPSSPSRTGPDRSLSLAGDEFAAENSPRRFIDRASPSHPFEYGLGRAIGRDDETS
GWQRKHYSDNNQKTTAVYHLGNGHEHQRPRALIDAYGNDTGKRSYNNKPLQVQRLDTNDI
DSKVAPASWQNTEEEEFNWEDMSPNLGDRGTSNDFLSSAVPPFGSFRTRPGFGVQSAAPL
EPDNRSSWSSQAQLPAVDDSSINAEDPVSLSSFGRGSTRKISGFRTERNQIRDSRYPQEA
WNMPPHLAKGRERNFHMPLLASGTSPSDCEKMSPLIDKLPDADPQICGPPTITSRIGPSL
DSFGVEPRPGVVPSYMGVRPPLNVHNSHPPHLLPNFMQQKHMRSQFQSINTSNTVNNLGP
NRSFYIPEQQMDGFGNKELSSTKLQQLPSQHAGLIPLSQAQVTPLQPQFLPSQDVHQSAA
AVLPPHFLAAPLNHGYNSRGHGATVSTGPSNPVPGVQLNILNRPLHLQGGSLPPLPPGPP
PVPPQMMSLTQNAVPGVSSQQPSTAFPGLFDSLMAQGLISLNKQAQDSVGVEFNADLLKV
RHESAINALYADLPRQCTTCGLRFKSQEEHRSHMDWHVTKNRMSKNRKQKPSRKWFVSVS
MWLSGAEALGAEAVPGFLPTESVVEKKDDEEMAVPADEDQNACALCGEPFEEFYSDEAEE
WMYKGAIYSNAPNGLTVGMDRSQLGPIVHAKCRSESSVVSSEDFRQEEGGITAEGSQRKR
MRI
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atggactccgaaaagctctcctccgttaaccttagggccaccaccgcgaccgctactacc
gaaaagcctcctccaccgccgattctcgagcggttcagggcgctgctgaagcagcgagac
gaagagctcagggcttcggccggaggagaagtcgacgacgacgatgaaatcgacgagagc
ttcgtcgttccgccgccgagttccgaggaaattgtggagctctacgagatgtttttgggg
gagcttactttcaattcgaagccagttattacggatctcacaataatcgccggcgagcag
aaggagcacgggaaaggcatcgcggatgcgatttgcgcccggattatcgaggtcccagtc
gagcaaaaacttccttcactatatcttttagacagtattgtcaagaatattggccgtgat
tacgtaaggcatttctctccccgtctgcctgaggttttctgtgaggcatacaggcaagtt
cagccaaatcagtataattctatgcgacatctctttggcacctggtcagcagtatttcca
ccttctgtccttaataagattgaggcacaactgcaattttctccttcagtaaataatcaa
tcatctgtcttggctaccatgagggcttctgaatctccacgaccaacacatggcattcat
gttaacccaaagtacctgcgtcagttggaacattcaactctggatactaatattcggcat
cctagaggaacttcagctttaaaaatgtatggtcaaaaacctgccattccatatgatgag
tttgatcctggtcatgcagaggttgtatcctcacaggttggagccccaagattgagctca
actggagatgcaggtcatacaccttttgcctttggggctaataaggcgcatccaccttca
actgccagacttgcaagaccctcttcgccttcaagaactgggcctgataggtctttatca
ttagcaggtgatgaatttgctgcagaaaattctcctagaaggtttattgatagggcctct
ccatctcatccatttgagtatggacttggtagagcaattggtagagatgatgaaacaagt
ggctggcagagaaaacactattctgataataatcagaaaactactgcagtataccacctt
ggtaatggacatgagcaccaaagaccgagagctttaattgatgcatatggaaatgacacg
gggaagagatcttataacaataagcctctgcaggttcaacgcctggacacaaatgatata
gacagtaaggtcgctccagcatcatggcagaatactgaagaggaagagtttaattgggaa
gatatgagccccaatttaggagaccgtggtacaagtaatgatttcttgtcatcagctgtt
ccaccatttgggagctttagaacaaggccgggttttggagtgcagagtgctgcccctttg
gagcctgataataggagcagttggtctagtcaggctcagcttcctgcagttgatgattct
tctataaatgctgaagatccagtctccttatcaagttttggtcgtggatcaacgcggaag
atatctggattccgaactgagagaaatcagattcgggattctcgctatcctcaggaggcc
tggaatatgcctccccatctcgccaaaggaagagagaggaatttccatatgcccttattg
gcaagcggtacatctccatcagattgtgaaaaaatgtctcctcttatagataagcttcca
gatgctgacccacaaatttgcggaccccctacaattacatcaagaattggtcctagtctt
gactcttttggtgtggaacctcggcctggtgttgtaccctcatatatgggggtaagacct
cccctaaatgtgcataactctcacccaccgcatctgctgcctaattttatgcagcagaaa
catatgaggagccaattccagtcaataaatactagcaatactgtcaataatctaggtcca
aataggtctttttatatccctgagcagcagatggatggttttggaaacaaggagctgagt
tctacaaagctgcaacaattgcctagtcagcatgcaggactaattcctctaagccaggca
caagtcactcctttacagccacaatttcttccatctcaggatgtgcatcaatctgcagca
gctgtgttgccacctcattttctggcagcccctttgaatcatggatataactcacgaggg
catggtgccactgttagtacaggtccatcaaatcctgtacctggtgtacagttgaatatc
ctaaacaggcctttacatttacaggggggctcattgccacctctacctcctggcccccct
cccgtgccaccacaaatgatgtctctcacacaaaatgctgttcccggtgtctctagtcaa
cagccgagcactgcatttcctggattgtttgattctctcatggctcagggtttgatctca
ttgaacaaacaggctcaggattctgtaggagttgagtttaatgcggaccttctcaaggtg
cgtcatgagtctgcaataaatgccctgtatgctgatctccccagacaatgcacaacctgt
ggccttagattcaaaagccaagaagagcaccgtagtcatatggattggcatgtaactaag
aatcgtatgtctaaaaaccgaaagcagaagccttctcgtaagtggtttgtaagtgtgagt
atgtggctcagtggtgcagaagcattaggagctgaagcagttcctgggtttttacctacc
gagtccgttgtagaaaagaaggatgatgaagaaatggctgtacctgctgatgaagatcag
aatgcatgtgcattatgtggagagccttttgaagagttttacagtgatgaggcagaagaa
tggatgtataagggggctatttactcaaatgcacccaatggcttgacagtaggcatggat
aggtctcagttaggcccaatagtgcatgctaagtgccggtctgaatctagtgtggtttcc
tctgaagattttagacaagaagaagggggaattactgcagagggtagtcaaagaaaacgt
atgcggatttaa
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integrated database retrieval system
