Quercus lobata (valley oak): 115991532
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Entry
115991532 CDS
T07350
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03013
Nucleocytoplasmic transport
qlo03015
mRNA surveillance pathway
qlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115991532
09122 Translation
03013 Nucleocytoplasmic transport
115991532
03015 mRNA surveillance pathway
115991532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115991532
03041 Spliceosome [BR:
qlo03041
]
115991532
Enzymes [BR:
qlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115991532
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115991532
Spliceosome [BR:
qlo03041
]
Complex C
Other components
EJC/TREX
115991532
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115991532
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
115991532
NCBI-ProteinID:
XP_030971146
LinkDB
All DBs
Position
5:complement(28525894..28533218)
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AA seq
427 aa
AA seq
DB search
MGEVKDNEYEEELVDFEDDDPKALDSASAKPVSDSAKRGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIEPVAGQVAALVL
CHTRELAYQICHEFERFSTYLPDIRVAVFYGGVNIRIHKDMLKNECPHIVVGTPGRILAL
ARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQEPMEIYVDDETKLTLHGLVQHYILLKEAEKNRKLNDLLDALDFNQVVIFVKSVTR
AAELNKLLTECNFPSICIHSGMAQEERLKRYKNFKEGQSRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQSRFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagtgaaggacaacgagtacgaggaagagctagtggacttcgaagacgatgac
cctaaagccctcgactccgcctctgccaaacctgtttctgattctgccaagaggggctat
gttgggattcacagttctggattcagagacttcctgttgaaaccagagcttcttcgagct
attgtggattcgggatttgaacatccatcagaagtgcaacatgagtgcataccacaagct
atattaggaatggatgtcatctgtcaagcgaaatctgggatggggaaaactgctgtcttt
gttctatccagtcttcagcagattgaacctgttgctggtcaagttgctgctcttgttctt
tgccacacaagagaactagcttatcagatctgtcatgaatttgagaggttcagtacctat
ttgcctgatataagggttgctgtcttctatggtggtgtcaatatcaggattcacaaggat
atgctgaaaaatgaatgtcctcatattgttgttggaacacctggaagaatattggctctg
gcaagggataaagatcttggattgaagaatgtgaggcattttattcttgatgagtgtgat
aagatgctagaatcactggacatgaggagagatgtgcaggagatcttcaagatgactcct
catgacaagcaagttatgatgttttcagcaactctcagtaaagagatccgccctgtttgc
aaaaaattcatgcaagagccaatggaaatttatgttgatgatgagaccaagttgactctt
cacggtcttgtacagcactacattttattgaaggaggcagagaaaaaccgcaaattgaat
gatcttcttgacgcattggacttcaatcaggttgtcatttttgttaagagtgtgaccaga
gctgctgagctgaacaagttacttaccgagtgtaacttcccctctatctgtatccattca
ggaatggcacaggaggagaggttgaaacgttataagaatttcaaggagggacaatcaaga
attcttgtggcaacagatttggtaggaagggggattgatatagagcgtgttaacatagtc
atcaactatgatatgccagattctgccgatacatacctgcacagggtgggcagggctggt
agatttgggactaaggggcttgcaattacatttgtctcatctgcatctgactccgatgtt
cttaatcaggttcagtcaaggttcgaggtggacataaaggagcttcctgagcaaattgat
acttcaacttacatgccatcatga
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