Quercus lobata (valley oak): 115991730
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Entry
115991730 CDS
T07350
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36-like
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115991730
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
qlo01002
]
115991730
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
qlo04121
]
115991730
03036 Chromosome and associated proteins [BR:
qlo03036
]
115991730
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115991730
Peptidases and inhibitors [BR:
qlo01002
]
Metallo peptidases
Family M67
115991730
Ubiquitin system [BR:
qlo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
115991730
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
115991730
BRISC complex
115991730
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
115991730
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
115991730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
Motif
Other DBs
NCBI-GeneID:
115991730
NCBI-ProteinID:
XP_030971466
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All DBs
Position
5:27818467..27829961
Genome browser
AA seq
438 aa
AA seq
DB search
MSLTCVKMSEEVWLTCLTHALSTETEEIMGLLLGDIEYSKNGSVTALIWGASPQTRSDRR
KDRVETNPEQLAAASAKAERMSTLVGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLD
AGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNNVSRPISLSPVNRSSVIDLESSLSSS
ENLSARSGSGRAESPELDTGDSRTAAANKGGGRSSELGVFFANADANYLGRERMGGTHRA
DSSDNIIVDIDPMDMSESMQEAMHRSNLEISGAEYVRKEVPLHVLPSSSFVKLESPLTSF
TDLQRVLYEEERAAYNQAILQNMRDGKVHPLSFIHHTSTYQASLCKLIEYCLSPAIKALQ
DRLKENENRLKTLTNEAKSLETEAPKGVESSSGSPRQAPSHGLRGNTSSGHRDLYSPTEP
TTTRSVAGSGSRSRKVYQ
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtctttaacatgtgtgaaaatgtcagaagaagtgtggttaacatgtctgactcatgca
ttgtccacagagaccgaagagatcatgggtcttcttcttggtgatattgagtactctaag
aatgggagtgtaactgcactaatttggggagcgtcacctcaaacaagatctgatcggcga
aaggaccgtgtggagactaatcctgaacagttggctgctgcatcagctaaggctgagaga
atgagcacattggttggaagaacaacaagagtaattgggtggtatcattcacatcctcat
attacagttcttccttctcatgttgatgtgcggactcaagcgatgtatcaacttctagat
gctgggtttattggactgatattttcctgttttagtgaagatgcaaacaaggttggaaga
atccaggtcattgcttttcagtcctcagatgggaagcagaataatgtgtcaagacctata
tctctttctcctgtaaatagaagttcagttatagatcttgaatcatctttaagttcctca
gaaaatttatcagcaagatctggctctggaagggcagagagccctgaactagacactggt
gattcaagaacagctgcagcaaataagggtggtggaagatcctcggagttgggggttttc
tttgctaatgcagatgccaactatctaggaagagagaggatgggaggaacccaccgtgct
gacagttcagacaacatcattgttgacatagaccccatggatatgtcagaaagtatgcaa
gaagcaatgcaccgttcgaatttggaaattagtggtgcagagtatgtcaggaaagaagtt
cctcttcatgttttgccatcatcttcctttgttaagcttgaatcccctttaacgtcgttt
acagacctgcagcgtgtgctatatgaagaggagcgggcagcatataaccaagccatattg
caaaatatgagggatgggaaagtgcatccgctttctttcatacatcatacctcaacttat
caggcttccttgtgcaaattaattgagtattgtttaagtccagccataaaggcactccag
gaccgcttaaaagagaatgaaaatcggttaaaaacgctgaccaatgaagccaagtctttg
gagacagaagcccctaaaggggttgaatcaagttcaggatctcctcgtcaagctccttct
catggtctccgaggaaatacttcatctggtcatagggatttgtatagtccaactgagccc
acgaccacaaggagtgttgctggttctggtagccggagcagaaaggtttatcaatga
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