KEGG   Quercus lobata (valley oak): 115991990
Entry
115991990         CDS       T07350                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115991990
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:qlo03019]
    115991990
   03041 Spliceosome [BR:qlo03041]
    115991990
Messenger RNA biogenesis [BR:qlo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     115991990
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     115991990
Spliceosome [BR:qlo03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    115991990
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 Nup35_RRM_2 RRM_Nup35
Other DBs
NCBI-GeneID: 115991990
NCBI-ProteinID: XP_030971872
UniProt: A0A7N2R4A1
LinkDB
Position
5:11655626..11661061
AA seq 385 aa
MEDYAERSHFEDDQFAYNGEEYREDFETLDHRHHHHQRREQFDSERGFEPEDNINSSGNE
IKHSSIVGHRDSASLGKLFVGGISWETSEDTFASYFGQYGEITDSVIMLDKHSGRPRGFG
FVTFSDPTVADKVLEDEHVIDGRMVEVKRTVPREDTDYKGVSKTKKIFVGGIPPSLTNEE
LKEYFSSYGSIVDHQIMVDHKTGRPRGFGFVTFESEDSVEEIFLEGKMHELGGKQVEIKK
AEPKRAGGDYRGNAAKSYGGFVGGAAGYGGYNSRGRGSGKMDRGYGGYGVYDAYGGYGGG
YGGSSASFYGGYSGYGYGFGYGGPMYGNAGYAAAGYGIPGGYAGAAGYSGSRGYGGVDGG
GGYDNGKGYERTGSSVSGRYHPYRK
NT seq 1158 nt   +upstreamnt  +downstreamnt
atggaggattacgcagaacgatctcatttcgaagatgaccaattcgcttacaatggcgaa
gaatatcgcgaagattttgaaaccctagaccaccgccaccaccaccatcagcggcgagag
caattcgattcagagcgcggttttgagccggaagataatataaatagctcaggcaatgag
ataaagcactcgtcgattgtgggtcaccgtgactctgcctctctaggaaagctttttgtt
ggaggcatttcgtgggagacctctgaagatacctttgctagttactttggtcagtatgga
gaaataacagattctgtaattatgttggataaacattcgggaagaccacgggggtttgga
tttgtaacattttctgacccaacagttgctgataaggttttggaggatgagcatgttata
gatggcagaatggttgaagtgaagaggacagtccctagggaggatacagactataagggg
gtatcaaaaacaaagaagatttttgttggtggaattccaccatctttgaccaatgaggag
ttgaaggaatacttctcttcttatggtagtattgttgatcaccaaattatggtggatcat
aaaactgggcggcctagaggctttggttttgtcacttttgagagtgaagacagtgttgaa
gaaatttttttggagggaaaaatgcatgaacttggaggcaagcaggtggaaataaaaaag
gcagaacccaaaagagctggcggtgattacaggggcaatgctgctaagtcatatggtggt
tttgttggtggtgcagctggatatggagggtataattccagaggtcggggtagtggaaaa
atggacagggggtatggtgggtatggtgtctatgatgcatatggcggttatgggggaggc
tatggtggaagttctgcaagtttctatggtggctatagtggatatggatatggatttggg
tatggtgggcccatgtatggaaatgctggatatgctgctgccggttatggcattcctggt
ggttatgctggtgctgctggatatagtggtagtcgaggatatggaggagttgatggcggt
ggtggttatgacaatggcaagggatatgaaaggaccggtagttctgtgtctggaagatac
catccttacagaaagtga

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