Quercus lobata (valley oak): 115992642
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Entry
115992642 CDS
T07350
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115992642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115992642
04121 Ubiquitin system [BR:
qlo04121
]
115992642
03036 Chromosome and associated proteins [BR:
qlo03036
]
115992642
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115992642
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
115992642
Ubiquitin system [BR:
qlo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
115992642
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
115992642
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
115992642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4_2
zf-HC5HC2H
zf-RING_2
zf-RING_UBOX
zf-C3HC4
zf-RING_6
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
zf-HC5HC2H_2
zf-RING_10
RTT107_BRCT_5
zf-rbx1
zf-Nse
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
115992642
NCBI-ProteinID:
XP_030972722
UniProt:
A0A7N2LPT1
LinkDB
All DBs
Position
5:complement(54336428..54343415)
Genome browser
AA seq
1014 aa
AA seq
DB search
MGDPTAHLEKMGRELKCPICLSLLNSAASLTCNHVFCNSCISKSMKSGSTCPVCKVPYRR
REVRPAPHMDNLVSIYKSMEVASGISIFVTQNAPSNKLSDREKQAEGDDNHGEQVMIGSC
QDIAEKQNTLKGKGSRKTFKSNMKSTSSISVKPSFPTKKRVQVPQCPLSETPTRLSKFEG
QLSEIAKEDPKRSSTTSKENSALNDKGEPVLLPFFWLREEDNTEKSSQHTDESHFMDLPQ
PDAPAFSDIKDSDDENPSNLTPTGGLHGKCSTVSDLFDSEMFEWTQRPCSPELCSSPFKT
QVANVEEINGIQENEVDEASQGVTAGEEQSTENAKCVNSKQGSVTADELSNASSPRTKGS
NDQNESNKSNRGRKIGKASEVARKKPAKRHTDSDFEIYVDLNKASENYIQEPTHDNKDGL
KLDHLDETRKRRKKTCFGTSAIKATPKNVHAVSVGTENLKHGKESMATETPASFGKKEGS
DENSTLKNARKGRKKIDCLIRSEKRKLDSVKDNMLEEISKIENHKNEHKIPELAPVSKSG
DRELRSRKKMKASADGILKDDLVNDSQKGHTYVSAKETQMSEKTLCNPDVKVQDDSSVVQ
KLPSRINEVVLRKCETVSKKFQCAFCLSSEESEASGELVHYYNGRPVAADHNGGSKVIHS
HRNCTEWAPNVYFEDDIAINLEAELTRSRRIKCCCCGNKGAALGCYEKSCRKSFHVPCAK
LIHQCRWDTDNFVMLCPLHASSKLPSESPESQGRRKECTLKGRLSQCDHVASKNVDITGR
NWNSCGSQKKLFLCCSAITTPERETVFKFERLSGVTILKKWDSCVTHVIASTDENGACKR
TLKVLMGILEGKWILNMEWIKACMKVMQIVDEEPYEITVDIHGIRDGPRLGRLRLLNQQP
KLFDGCKFYFMGDFTPEYKGYLQDLVIAAGGTILHRKPISEVQKAMLSGSSTCQTFIIYS
IELPDEYDPSKKTTIINRRQFDAEALASSTGAKLASNSWVLNSIAGCHLQNLAE
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatccgacggcccacctggaaaaaatgggcagagaactcaagtgccccatttgc
ttgagtttgctaaactccgcggcttcgcttacatgcaatcatgtgttctgcaattcgtgc
atttcgaaatcgatgaaatcgggctccacttgtccggtttgtaaagtcccatatcggcgt
agagaggttcgtcctgctcctcacatggataacctagtgagcatctacaaaagcatggaa
gttgcttcaggaatcagtatatttgtcactcagaatgcaccctcaaataaattatcagat
agagaaaagcaagctgaaggtgatgacaaccatggtgaacaagttatgataggaagttgc
caggatattgcagagaaacaaaataccttgaaaggaaaagggtcaagaaaaacatttaaa
tccaacatgaaaagcactagttctatctctgtgaaaccttcatttccaaccaagaaaagg
gttcaggtgccacagtgtcctctttcagaaaccccaacaaggctctcaaagtttgaaggt
caattgagtgaaattgccaaagaagatcctaaaagaagttcaaccacttcaaaggagaac
tctgctctaaatgacaagggagaaccagtgcttttacctttcttttggttgagagaggag
gacaatacagaaaagtcaagtcagcatactgatgagagtcacttcatggatctgccacag
ccagatgctcctgccttcagtgatattaaagactcagatgatgaaaacccttccaatttg
accccaactgggggattgcatggaaaatgctccactgtttcagatctttttgatagcgag
atgtttgaatggacacaaagaccttgctctcctgaactttgttcaagtcctttcaagaca
caggttgcaaatgtggaagaaattaatggaattcaagaaaatgaggtagatgaagcctca
caaggtgtgactgctggtgaagaacaaagcactgaaaatgcaaaatgcgtgaattctaaa
caaggaagtgttactgcagatgagctgtccaatgcgtcctctcccagaactaaaggttcc
aacgatcaaaacgagagcaataaatctaacaggggtcgtaagattgggaaggcaagtgaa
gtggcccgaaagaagcctgccaaaagacatacagattcagattttgaaatttatgttgat
ttgaataaagcatcagaaaattatatccaagagccaactcatgataataaagacggttta
aagttagatcacttagatgagacaaggaaaaggagaaagaagacttgttttggtaccagt
gcaattaaagcaacacctaaaaatgttcatgctgtctctgtgggaacagaaaatctgaag
catggtaaagaaagcatggcaactgagacccctgcttcattcggtaagaaagaaggcagt
gatgaaaattccaccttgaagaatgctagaaaagggcgtaagaagattgattgcttaata
aggtctgagaaacggaagcttgattctgtgaaggacaacatgcttgaagaaatatctaag
attgaaaaccataaaaatgagcataaaatcccagaattggcccctgtatctaagtctggt
gatcgagaactgagaagtaggaaaaagatgaaagcttctgctgatggcattttaaaggat
gatttggtcaatgacagccaaaaaggtcatacttatgtttctgctaaggaaacccaaatg
agcgaaaagactctatgcaatcctgatgtcaaagttcaggatgactcatcagtggtgcag
aagctaccttctcggataaatgaagtagtcttacggaaatgtgagactgtttctaaaaag
tttcaatgtgctttctgtctttcttcagaagaatcagaggcttcaggagaactagtgcac
tactataatggtaggcctgttgctgccgatcacaatggaggatctaaggtcatacactca
cataggaattgtactgaatgggcccctaatgtctattttgaagatgatattgcaattaat
ctagaagctgaattaactagaagccggagaattaagtgttgttgctgtggaaataagggg
gcggctcttggctgttatgagaagagctgtcgcaagagtttccatgttccttgtgcaaag
ttgatccatcaatgtcgatgggacactgataacttcgtcatgttatgccctcttcatgcc
tcatctaagcttcccagtgaaagccctgaatctcaaggaaggaggaaggaatgcactctt
aaagggcgactatctcaatgtgatcatgttgcaagtaaaaatgttgacattactggtaga
aactggaattcttgtggatcccaaaagaaattgtttctctgctgttcagctatcacaact
ccagagagggaaactgtttttaaatttgagagattatcgggagttacaattctgaaaaag
tgggattcgtgtgtcacccatgttattgcatcaaccgatgaaaatggggcatgtaaaaga
accctcaaagtattgatgggtatcttggagggaaagtggatactgaatatggagtggatt
aaggcttgcatgaaggtcatgcaaattgttgatgaggagccttatgaaattactgttgac
attcatgggatcagagatggccctcgacttggaagactaagattgctcaaccagcaacca
aagcttttcgatgggtgtaagttctatttcatgggagattttacacccgaatacaaggga
tacctacaagaccttgtaattgctgctggaggaacaattctgcatagaaaacctatttca
gaggttcaaaaagccatgttatctggctcctcaacatgtcaaaccttcataatttacagt
attgagctgccagatgaatatgatcctagcaagaaaactacaattatcaaccgcaggcag
tttgatgcagaggccctggcaagttcaactggagccaaattagccagcaattcatgggtt
ttgaactccatagcaggctgccatttgcaaaatcttgccgagtaa
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