Quercus lobata (valley oak): 115992760
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Entry
115992760 CDS
T07350
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03082
ATP-dependent chromatin remodeling
qlo03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115992760
03083 Polycomb repressive complex
115992760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
qlo03036
]
115992760
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
115992760
Histone modification proteins
HAT complexes
HATB complex
115992760
HDAC complexes
Sin3A-HDAC complex
115992760
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
115992760
PRC2.2
115992760
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
115992760
Heterochromatin formation proteins
Other heterochromatin formation proteins
115992760
Chromatin remodeling factors
NuRD complex
115992760
NuRF complex
115992760
NuRF complex (fruit fly)
115992760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
WD40_RFWD3
WDR90_beta-prop_4th
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
115992760
NCBI-ProteinID:
XP_030972840
UniProt:
A0A7N2LKI8
LinkDB
All DBs
Position
5:12697506..12705476
Genome browser
AA seq
463 aa
AA seq
DB search
MKERGKGTEPSVDERYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLY
LSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKFKTIIHPGEVNRIRE
LPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE
PFVLSGGKDKSVVLWSIHDHISTLAADTGATKSPGSGGSSAKHASKAGGTNDKPADSPSI
GPRGVYQGHGDTVEDVQFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHDADLHC
VDWNPHDVNFILTGSADATVRMFDRRNLTSGGVGSHVHKFEGHNAAVLCVQWSPDKSSVF
GSSAEDGILNIWDHEKVGNVGSKMQNVPPGLFFRHAGHRDKVVDFHWNASDPWTIVSVSD
DCESTGGGGTLQIWRMIDLIYRPEEEVLAELDSFKSHILTCSS
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagagagggaaaggaacagagccatcagtggatgagaggtacactcaatggaaa
tcgctggtgccagtgctctacgactggctcgccaatcacaacctcgtttggccttctctc
tcttgccgatggggtcctcaactagagcaagccacttacaagaatcgccaacgtctttac
ctttcggaacagactgatggcagtgttccaaatacccttgtcatagcaaactgtgaggta
gttaaacctagggttgcagctgcagagcacatatcacagttcaatgaggaagcgcgttct
ccatttgtaaagaagttcaaaactattatacatcctggcgaggtgaacagaatcagggaa
ctcccacagaatagtaagatcgtggccacacacactgacagtcctgatgtccttatttgg
gacgttgaggctcaaccaaatcgtcatgctgttctgggagctacaaattctcgtccagac
ttgatattgaccgggcatcaagataatgctgaatttgctcttgctatgtgtcctactgaa
ccctttgtgctttctggaggcaaggacaagtctgtagttttgtggagtattcacgatcat
atctcgactttagcagcagacacaggggctacaaagtctccggggtctggtggcagcagc
gctaagcatgcctctaaggctggtgggactaatgataaacctgcagacagcccttctatt
ggtccacggggtgtctaccaagggcatggggataccgtagaagatgtgcagttctgccca
tcaagtgcacaggagttctgtagcgtaggcgatgattcttgccttatattatgggatgca
agagtgggatcttctccagttgtcaaggttgagaaagctcatgatgctgatcttcattgt
gttgattggaatcctcatgatgtaaatttcattctgacagggtctgctgatgctactgtt
cgcatgtttgatcgccgtaatctcacctctgggggtgttggatcacatgttcataaattt
gagggtcacaatgcagctgtcctttgtgtacagtggtctcctgacaagtcatctgtcttt
ggaagttctgctgaggatggcattttgaacatttgggatcatgagaaggttggtaatgtt
ggatccaaaatgcaaaatgttcctccaggcttattcttccgacatgcaggccatagggac
aaggttgtggacttccattggaatgcatctgatccgtggacaattgtcagtgtgtccgat
gattgtgaaagtactggaggaggtggtacactgcagatatggcggatgattgatttgata
tacaggcccgaggaagaagttctagccgaattggattcattcaagtcccacattttaaca
tgttcctcttga
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