Quercus lobata (valley oak): 115992851
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Entry
115992851 CDS
T07350
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115992851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115992851
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115992851
mRNA degradation factors
5'-3' decay
Decapping complex
115992851
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_EML_2
DUF445
GDH_C
Motif
Other DBs
NCBI-GeneID:
115992851
NCBI-ProteinID:
XP_030972945
UniProt:
A0A7N2R5C8
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All DBs
Position
5:complement(66370925..66383069)
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AA seq
1369 aa
AA seq
DB search
MASPVNPNLQNQNQNQQGTQFDLQKLFKPTSNPGNLNTSPSFPTPASSPSSSSPPYLLPS
SSYPPPTGPSYPFHHPHFLPYPPPPTPLDHFVHQFPQPNLHAPLRPISPTPTTSTTSATT
TTTSATDFSMTHLTITPSTPPTRLLSTKLPRGRHLIGDKLVYDIDVRLEDEAQPQLEVTP
ITKYASDPGLVLGRQIAVNRSYICYGLKMGNIRVLNINTALRSLLRGHSQRVTDMAFFAE
DVHLLASASVDGRIFIWKINEGSDEDDKPQITGKIVLSIQIEGAGESVHPRVCWHPHKQE
ILMVAIGNRVLKIDTTKVGKGVVFSAEEPLKCLIDKLIDGVQSVGKHDGEVTELSMCQWM
TSRLASASMDGTVKIWEDRKASPLAVLKPHDGNPVNSVTFLTAPHRPDHIVLVTAGPLNR
EVKIWASMSEEGWLLPSDTESWRCTQTLDVKSSSERKVEEAFFNQVIALPRAGLFLLANA
KKNAIYAIHIEYGPNPASTRMDYIAEFTVTMPILSLTGTSDSLPDGEHIVQVYCVQTQAI
QQYALDLSQCLPPPLDNVGLEKSDSNVSRAFDASDGSATFESPPGTKFTEIPEVNATTIA
PILSSSSENAPEASRPENLASSEVTNLPEVAISGMETVASDLPSHSSAENIHAALPPLPL
SPGLSREFHGFRSPSNSSETSPPLTDYGGDQSPLEYTSDRRMDTGKDSMTNVPPSVDNLS
KGDKNAVHSDVSNVPSPPIVFKQPTHLVTPSELLSTAPSSSENSQINLGVNVVEAKVQDV
VVSNDAESTEVEVKVIGETGTSQDNEFDSQRDSHIMVAQKKEKSFYSQASDLGIQMARDC
CVGNYGVDKFRQANDVSITEAPNQPPNPCAEEAQDMMKDITAKVGESETPMGVLQSPAPV
LKGKRQKGKNSQVSGASSPSPSPFDSTDSLNEPSGDSGSPSLETALPQLLAMQEMLEQLM
STQKEMQKQMNVIVSGSVTKEGKRLEGSLGRSMEKVVKANTEALWARFQEENAKHEKLEQ
DRMQQITNLVTNYMNKDLPTMLEKTLKKEIGLVGPAVARAVTPIVDKTMSSAIMESFQKG
VNQLERSVSSKLEGSMTRQIQAQFQTSGKQALQDALRSSLEASIIPAFEMSCKTMFEQVD
TTFQKGLVKHTSATQQQFESTHSPLAVALRDAITSASAITQTLSGELADGQRKLLAIAVA
GANPKAVNPLVTQLSNGPLAGLHEMAEAPVDPTKELSRLIAECKFEEAFTGALQRSDVSI
VSWLCSQVDLQRILSTMPLPLSQGVLLALLQQLACDISNETPRKLAWMTDVAVAINPADP
MIAVHVRPIFEQVYQLLGHHRNLPTTSASEANSLRLLMHVINSVLMSCK
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccctgtaaatcccaacctccaaaaccaaaatcaaaatcaacaaggaacacaa
tttgatttgcaaaagctcttcaaacccacatcaaatcctggtaatctaaacacctctcca
tctttcccaactccggcttcttctccatcctcttcatcacctccatatctcttaccttct
tcttcttatcctccaccaactggtccttcataccctttccaccaccctcactttcttcca
taccctcctccaccaacgcctctcgaccactttgtccaccagtttcctcaacctaacctc
catgcccctctcagacccatctccccaactccaacaactagtaccacttcagcaacaaca
acaacaactagtgccactgatttctcaatgacccatttgaccattacgccttccacgcct
cccacgaggctgctcagcacaaaactcccaaggggtcgccatttaataggtgataaactt
gtctatgacattgatgttcgcttggaagatgaggctcagccacagcttgaagtcactcct
atcactaagtatgcctctgatcctggccttgtgcttggccgtcagattgctgttaataga
tcttatatttgctatggcctcaagatgggtaatatccgtgtccttaacattaacactgcc
ctaagatctttgctccgaggccacagccagagagtaactgatatggctttcttcgctgaa
gatgttcaccttttggctagtgctagcgttgatggacggattttcatttggaagatcaat
gaaggttcagatgaggatgacaaacctcaaatcacaggaaaaattgttctttctattcag
atagagggagcaggggagtcagtccacccacgagtgtgttggcatcctcacaaacaagaa
attttgatggttgcaattggaaaccgtgtccttaaaatcgacaccacaaaagttggaaag
ggtgtagtgttctcagcagaggaacctcttaaatgtctcattgataaactaattgacggg
gtccaatctgttggtaaacatgatggtgaggttactgagttgtcaatgtgccaatggatg
accagccgtttagcttcagcatcaatggatggcacggtgaagatttgggaggaccgtaag
gcatcgccacttgcagtattgaaaccacatgatggcaatcctgttaattctgtgacattt
ttgactgcccctcaccgtccggaccacattgttcttgttacagcggggccacttaatcgg
gaagtgaagatatgggcctctatgagtgaggagggctggttgttgcctagtgatactgaa
tcatggcggtgtactcagactttggatgtaaagagttcctctgaacgtaaggttgaggaa
gcattctttaatcaagtcatagcattgcctcgtgcaggcttatttctacttgcaaatgca
aagaaaaatgctatatatgctatacatatagagtatgggcctaatccagcttcaacccgc
atggattacattgctgagtttacagtcacaatgcctattctgtctcttactggaactagt
gacagtttaccagatggagaacatattgtacaggtctactgcgtccaaacacaagccatt
cagcagtatgcattggacctatctcagtgcctgccaccgcccctagacaatgtgggcttg
gagaaatcagactccaatgtttctcgagcttttgatgcttctgatggttctgcaactttt
gaatcacctcctggaacaaaattcactgagatacctgaggttaatgcaaccaccatagca
cctattctttcaagcagctctgaaaatgccccagaagcaagccgtcctgaaaacttagct
tcttctgaggttaccaacttgccagaagttgctatttctggcatggaaacagttgcaagt
gatttgccttctcatagtagtgccgaaaatatccatgctgcattgccacctcttcctttg
agtccaggtttatctcgtgaatttcatggttttagaagtccatcaaatagctctgagact
agtccacctcttactgattatgggggtgatcaatcacctcttgaatatacgtctgatcgg
agaatggacactgggaaagatagcatgactaatgtgcctccctcggttgacaatttgagt
aagggtgataaaaatgctgtacacagtgatgtttccaatgttcccagtcctcctatagta
tttaaacaaccaacacatctggtaactccatcagagttgttatctacagctccatcatca
tctgagaattctcaaattaatcttggtgtgaatgtggtagaggcaaaagttcaagatgtg
gttgtcagcaatgatgcagaaagcactgaagtagaggtcaaagttattggtgagacagga
accagtcaagataatgagtttgacagtcagagagattctcacattatggttgctcagaaa
aaggagaaatccttctattcccaggcatcagatcttggcattcagatggccagagattgt
tgtgtgggaaattatggtgtggataaatttcggcaagctaatgatgttagtattactgaa
gcaccaaaccaacctcctaacccttgtgctgaagaagctcaagatatgatgaaagatata
actgcaaaggttggcgaatcagaaactcctatgggagttttgcagtctccagccccagtg
ctgaagggaaaaagacagaaggggaaaaattctcaagtgtctggtgcatcttctccttct
ccaagtccttttgactctacagattcgttaaatgaaccaagtggtgattcaggttcccca
tctttagaaactgctttgccccagttactggctatgcaggagatgcttgaacagttaatg
agcacgcaaaaagaaatgcagaagcagatgaatgtgattgtttctggctcagttaccaaa
gaaggtaaaagactagagggatccttgggccggagcatggagaaagttgtcaaggctaac
actgaagctttgtgggctcgtttccaggaagaaaatgcaaagcatgagaagctagaacaa
gaccgtatgcagcagataacaaacttagtcacaaattatatgaacaaggacttgccaacc
atgctcgagaaaactttaaagaaggaaataggtttggttggaccagctgtagctcgtgca
gttactccaattgtggataaaactatgtcatcggctattatggagtcattccagaaaggt
gtgaaccaacttgaaagatcagttagttcaaaacttgaaggtagcatgactaggcaaatt
caagcacagtttcaaacttctgggaagcaagctcttcaggatgcactgaggtctagtctg
gaagcttcaataatccctgcatttgagatgtcatgcaaaactatgtttgagcaagttgat
accacattccagaaagggcttgtcaaacatacatctgctactcagcagcagtttgagtcc
acacattctccattagccgttgctttaagggatgcaattacttcagcatcagcaatcact
caaaccttgagcggagaattggctgatggccagcgaaagctgttagccattgcagttgca
ggtgctaacccaaaagcagtaaatcccttggtaacacagttgagcaatggacctttggct
ggtcttcatgagatggctgaggcacctgtggatccaactaaagaactatctagattgata
gctgagtgcaaatttgaggaagcgttcactggagccctgcagagaagtgatgtctcaata
gtttcgtggttatgttctcaggttgatttacaaagaattttgtcgacaatgccactccct
ctaagccaaggagttctgctggctcttctccagcaacttgcttgtgatattagcaatgaa
acacctagaaaattggcatggatgacggacgtagctgttgccataaacccagcagatcca
atgattgcagtgcacgttcgtcctatctttgagcaggtatatcagttactgggtcatcat
cggaacctaccaacaacctctgcttctgaagcaaacagcctccgccttcttatgcatgtt
attaactctgtgttaatgagctgtaaatga
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integrated database retrieval system
