Quercus lobata (valley oak): 115992964
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Entry
115992964 CDS
T07350
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115992964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qlo03021
]
115992964
Transcription machinery [BR:
qlo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
115992964
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
Ribosomal_S27e
Motif
Other DBs
NCBI-GeneID:
115992964
NCBI-ProteinID:
XP_030973075
UniProt:
A0A7N2R5F8
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All DBs
Position
5:69769849..69782994
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AA seq
541 aa
AA seq
DB search
MSFDLLLKPSCSGCGSTTDLYGSNCKHLTLCLTCGKTMAENRGKCFECGTTVTRLIREYN
VRASSSNDKNYFIGRFVTGLPNFSKKKSAENKWSLHKEGLQGRQVTDALREKYKNKPWLL
EDETGQFQFQGHLEGAQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM
KNRKKTADGYERWMMKAANNGAAAFGEVERFDDKESGVAGGRGRKKTTGDEEEGNVSDKG
EEDEEEEAARKNRLGLNKREGDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVG
NDPEEREELAPEVPAPPEIKQDEEDEDEDNEEEGGLSKSGKELKKLLGRTGGLNDSDAED
DDDDEDIDDDIGLSPVLAPKQKDAPKEEPAENSPLKTAPSGPAKGTPSSSKSSKSKRKLN
GDDAKATNGAPPKKVKTENELKSSVKEENVPTSKSTVPSKGTPSSSSKSASTSSAGPVTE
DEIRAVLMQKTPVTTQDLVANFKARLRSPEDKNAFAAILRKISKIQKSNGSKSNYVVLRE
K
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgatctgctgttgaagccgtcgtgtagtggttgcggatcgaccacggacttg
tacggaagcaattgcaagcacttgactctgtgcttgacctgtggcaaaaccatggccgag
aaccgtggaaagtgcttcgagtgcggcaccaccgtcactcgcttgattcgagaatataat
gttcgtgcaagttctagcaacgacaagaattactttattggtagatttgtgactgggctg
ccaaatttttcgaagaagaaaagtgctgagaataaatggtctctacataaagaagggctt
caaggacgccaagttactgatgccttgcgggagaagtacaagaataaaccctggctattg
gaggatgaaacagggcaattccagtttcaaggtcatcttgaaggtgcacaatctgctacg
tattacctattaatgatgcaaggaaaggagttcgttgctatccctgctgggtcttggtac
aactttaacaaggttgcacagtataagcaacttacgctggaggaagcagaagaaaagatg
aagaataggaaaaagactgctgatggatatgaacgatggatgatgaaagctgcaaataat
ggagctgctgcatttggtgaagtggagaggtttgatgacaaggagagtggtgtggctggt
gggaggggacgtaaaaaaacaactggtgatgaagaagaaggtaatgtttcagataaaggg
gaggaggatgaagaagaagaggcagcaaggaagaatcgattgggactcaacaaaagagaa
ggtgacgatgatgaggaaggtccaaggggtggtgatcttgatttggatgatgatgatatt
gaaaagggtgatgattgggagcatgaagaaattttcactgatgatgatgaagcagttggt
aatgatcctgaggaaagagaagaattggcccctgaagttcctgctcctccagaaattaag
caggatgaagaggacgaggatgaagataatgaagaagagggtggactgagtaaatctgga
aaagagttgaagaagctacttgggcgaactggtgggctgaatgattcagatgctgaggat
gatgatgatgatgaggatatcgatgatgatattggcctttcccctgtgctggctccaaag
cagaaggatgcacctaaagaggaacctgctgaaaacagtcctttaaaaacggcgccttct
ggacctgctaagggaaccccatctagctccaagtcttcgaagtctaagagaaaattgaat
ggggatgatgcaaaagcaacaaatggtgcacctccaaagaaggtgaagacagaaaatgaa
ctaaaatcttctgtaaaagaagaaaatgttcctacttctaaaagtactgtgccttcaaaa
ggaacaccatcatcatcatcaaaatctgcttcaacatcatctgctgggcctgtcactgaa
gacgaaatcagggctgttttaatgcaaaagacaccagtgacaactcaggatcttgttgct
aattttaaggcaagattaagatcaccagaggacaagaacgcatttgctgccatcctgagg
aaaatttctaagatacagaagtcaaatggatccaagtctaactatgttgttttgagagag
aaatga
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