KEGG   Quercus lobata (valley oak): 115993676
Entry
115993676         CDS       T07350                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
qlo  Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:qlo03009]
    115993676
Ribosome biogenesis [BR:qlo03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    115993676
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_EML NBCH_WD40 Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_HPS5 Beta-prop_RIG_2nd Beta-prop_DCAF4 ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_IP5PC_F Beta-prop_Vps41 Beta-prop_VPS8 Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_WDR75_1st Beta-prop_SCAP WD_LRWD1 Beta-prop_BBS7 Beta-prop_WDR75_2nd WDR54 Beta-prop_SPT8 Beta-prop_LRRK2 Beta-prop_Nup120_160 PEP5_VPS11_N Ge1_WD40 Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 115993676
NCBI-ProteinID: XP_030973481
UniProt: A0A7N2QY79
LinkDB
Position
6:complement(48777501..48782672)
AA seq 448 aa
MEVVVASSSIDGGIGCWDVHTGAEQLRYKTCVSPPHGLACVGQRFLASSQIRDPSANSGC
ILYWSWSKPQVEVKSFPSEPIQPVAANREGTYIVGGGVSGDIYLWEVATGRQLRKWNAHY
RAVTCLVFSDDDSLLISGSEDGSVKVWSLFMIFDDLRRQRSDHLYEHNFSEHTLRVTDIV
VGYGGSNAIIVSASADRTCKVWSLSKGKLLRNIVFPSIIDAIVLDPGEHVFYAGSRDGKI
YIAALSAESTSKSNYGLHIINSLSNHSKAVTCLAYCARGNLLLSGSDDGMVRVWDAKTHN
IVRVFKHAKGPVNNILVVRPELNFNFRPNSQASSRRHGSLLPPALDKYRNPTDEDADTTT
VIGLQSTCRKSIDPSYFSSHVINNQIKELQQQGSSAAAEMETERLKLECTRSMQMVQQWK
KMYENLHQFCVNELLDSDQAGISNGNST
NT seq 1347 nt   +upstreamnt  +downstreamnt
atggaagtagtggtggcttcctcttccatcgacggcggcatcggctgctgggacgtccat
accggcgcggagcaactccgttacaagacttgcgtctctccgcctcatggcctcgcctgc
gttggccaacgcttcctcgcctcttctcagatccgtgatccctccgccaactctggctgc
atcctctactggtcttggtccaagcctcaagtagaagttaagagctttccttcggaacca
atacagccagtcgctgctaaccgcgaaggcacgtacattgttggtggaggcgtatctggt
gatatttacttgtgggaggttgccactggtagacaacttaggaaatggaatgcgcattat
agggctgttacttgcttggtattttccgatgatgactcactgctaatttctggttcggag
gatggatccgttaaagtttggtccctcttcatgatattcgatgatttgagacgacagcga
tctgatcatctatatgagcacaatttttcagagcacactttgcgtgtaactgatattgta
gtcggatatggaggaagcaatgccattatagtatcagcttctgcggatcgaacttgtaag
gtgtggagcttatcaaagggaaaattattaagaaatatcgtattcccttcaataattgat
gcaattgtacttgaccctggcgaacatgtcttctatgctggcagtagagatggcaagata
tacattgctgcacttagtgctgaaagcacctctaaaagcaactatgggttgcatatcata
aattcattatcaaatcacagcaaggctgttacttgcttagcatattgtgcacgtggaaat
cttttactttctggatcggatgatggtatggtacgagtttgggatgctaaaactcacaac
attgttcgtgtgttcaagcatgcaaaaggtcctgtaaacaatattcttgttgttagacca
gagctcaactttaattttcggccaaattcacaagcttcctcaagaaggcatgggtcattg
ttaccacctgcgctggataaatataggaatccaacggatgaagatgcagacactacgact
gtcattggtctccagtctacttgcaggaaatcaatagatccttcatacttcagttcacat
gtgataaataatcaaatcaaagaacttcagcaacaaggttcttctgctgctgctgaaatg
gagacggaaagactaaagcttgagtgtacaagatctatgcaaatggttcagcagtggaag
aaaatgtatgaaaacttgcatcaattctgtgtaaatgaacttttggacagtgatcaagca
ggaatctccaatggaaactccacctaa

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