Quercus lobata (valley oak): 115994163
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Entry
115994163 CDS
T07350
Name
(RefSeq) LOW QUALITY PROTEIN: SAC3 family protein B
KO
K23719
nuclear mRNA export protein SAC3
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115994163
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX-2 complex
115994163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAC3_GANP
Motif
Other DBs
NCBI-GeneID:
115994163
NCBI-ProteinID:
XP_030974085
LinkDB
All DBs
Position
6:complement(6165238..6181934)
Genome browser
AA seq
1609 aa
AA seq
DB search
MMQQLEEEERRKRDYAGFTKASGPSGPPQSPLLSLLPNVSTSAPLLRSSTPRPRGPGALI
GVQRSPPLAFERAGPAVRPAYQNSSGIRRGPEAAESRPLAFESTRFAANPPHSSAGVHRS
METPPSWGDRQRSLSKDYQAQIHQGSSASLLASRNSGTNITARVARSQNPERTKSPPSLY
PNSDIAGYSSQPVRARPPSFSTPLDNRPRSPVNYADLLDHQDQPSVSPYLGSDASARSFS
TDTGGVQVLKRTRSPPLQSGSEVLQDNLHFAQSGSKRPSISPPMLGTRSNFVSTSDSQIH
QRFSPSAINPVTEVAATKLTSSPAPKRTRSPPLLSSDRVFPDYSDSTQDDTEREMQAKAK
RLARFKVELNANVQGGPDFADQKANKHEQSMVERQKYVGNHPPELAGDFTNGHVSSDYDA
SESSTIITGSCPDMCPESERAERERKGDLDQFERLDGDRNQTSKSLAVKKYTRTAEREAG
LIRPMPILQKTIDYLLNLLDQPYDDKFLGVYNFLWDRMRAIRMDLRMQHIFNQGAIVMLE
QMIRLHIIAMHELCEHXQGEGFSEGFDAHLNIEQMNKTSVELFQLYDDHRKRGINVPTEK
EFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEIRQTPEVLFARDVARACRTGNFIAFF
RLARRASYLQACLIHAHFAKLRTQALASLHSGLQNNQGLPVTHVAKWLAMEDEDIESLLQ
YHGFSIKVFEEPYMMKEGPFLNLDKDYPTKCSELVHIKRSKMVVEDVSPSTQVVSSPAKA
TEEIKFSKIHKHDMISTPYIEKESYTHRIDEEMSDLDAILSPKDSRQPQPIVIKPTVSKQ
GENDRQAADASISPWGFLLSHSSPRPELTKVGTVGKPNSDALFRSSNERNMHCDIGGMPL
QMVSTTVLQERASGGKYDYAVENSGSPSVVFNNLEDAEATDIHTDIHEENEICKVVTDDY
DEETAEAKLKLILRLWKRRSIKRREVREQRQLAANAALDLLSLGPPIRQSKDQPSNIGEF
DIDHVMWERYKRHVESWSRLNVSDVIAGILSRRNPDAKCLCWKVIVCSLINNSGGVKLEQ
RNQVACLPAGSWLLSKLMPFSKGDDDDLVISSPGLSIWRKWASQYDADPTCCLSIVKDTD
FDNLDETVAGASAVLFLVSDNIPWNHQKVQLQKLLMSIPSGSCLPLLILSGSCKEETPDS
FSIMVNELGLHEIDKSQISSFQVFPLVVNHEMEHSDGFFSDEQLREGLKWLASESPLQPV
LHNMKTRELVLPHLNSSLEVLERINDFEVSPNNCISAFNKALDWSLEEIASAAKANPANW
PCPEIALLEESSDEHRVVKWYLPTIGWNSLKKIEPLMCALRDCKLPAFTDDISWLARGSH
MGKEIKNQRLQLENCLVTYLTSSKMMRYTEAMKEASLMLQKSAHLELHNSCYCIVPKWVM
IFRRIFNWRLMNLSSGSFSVAYVLECHHVAPPITGDVDMLGLEDSVPSHYLNHPSLDEII
EGCCSLPPLLGGDESQPEAFQPLSRMVPNGEVHEATTNTNDLVEDERDVVQDGNLDITYE
MSYTNVFDSTFTEIVVAGKATQEAENLSKLLEQCNIEQNKLDETLSIYF
NT seq
4830 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaacaactagaagaagaagaaagaagaaagagggattatgctggatttaccaaa
gcttctggcccatcaggacctccacaatcaccattactatcactacttcccaatgtttcc
acttctgcccctctcctccgatcttcaactccaagacccaggggaccaggagctttaata
ggagtgcagcggtcacctcctttggcttttgagagggctggtcctgcagtccgtcctgct
tatcaaaactcttctggaattcgtaggggacctgaagctgcagagtcacgtccattagct
tttgaaagcacccgttttgctgctaatccacctcattcatccgcaggagtccataggtcg
atggagactcctcctagctggggtgacaggcaaagatctctttctaaagattatcaagcc
caaatccatcaagggtcttctgcttcacttcttgcttcacgtaattcaggaactaacatt
acagccagggttgcccgatctcaaaacccagaaagaaccaaatcacctccctcattgtat
ccaaatagtgatattgctggttattctagtcaacctgtccgtgcaaggcctccttcattt
tccactccattggataatcggcctaggtcaccagtcaattatgctgatttgctggatcat
caagatcaaccatcagtttcaccctatttaggttctgatgcttctgcaagaagtttttca
actgatactggtggtgttcaagtcctgaaaagaaccaggtccccacctttacaatctggg
agcgaagttctacaggataatttgcattttgctcaaagtggctctaaaaggccttcaata
tctcctcctatgttgggcactaggtcgaatttcgtttctacttcagattctcaaattcat
cagaggttttcaccatctgcaatcaatcctgtcaccgaagttgcagcaacgaagctcacc
agctccccagctcccaaaagaacgaggtcaccgcctttgctttctagtgatcgagtcttt
cctgattattctgattccacccaagatgatactgaacgagaaatgcaggccaaggcaaag
cgattagctcgtttcaaagttgaattaaatgcaaatgtgcaaggtggtcctgattttgct
gatcaaaaagcaaataaacatgagcagtctatggtggagaggcaaaaatatgttgggaac
caccctccagaattggcaggagatttcaccaatggccatgtttcatctgattatgatgcc
tcagaatcatctaccatcataacggggtcatgtccagatatgtgtcctgagtcagagagg
gcagaacgtgaaagaaaaggggatctagatcaatttgaacgcttggatggcgatagaaat
caaaccagtaaatcccttgctgttaagaagtatactaggacagctgagagggaagcaggt
ttgatacgtcccatgccaatcctgcagaagacgattgattatctgctcaatttgctagat
cagccttatgatgacaagtttcttggcgtatataacttcttgtgggataggatgagggca
atccgaatggacctgagaatgcagcacattttcaatcaaggggctattgttatgctggag
cagatgataagacttcacataattgcaatgcatgaattatgtgaacacnaccaaggagag
ggcttttctgaaggattcgatgcacaccttaatattgaacagatgaataaaacatcagtt
gaattattccagttgtatgatgatcacagaaagagaggaataaatgtaccaacagaaaaa
gagttccggggctattatgcacttctcaaactggacaagcatcctggctataaagttgaa
cctgcagagctctcgcttgatcttgcaaagatgactccagagataagacagactccagaa
gtactatttgcccgtgatgttgcaagagcttgcagaacaggtaactttattgccttcttt
cggcttgcgaggagagcaagttaccttcaagcatgcctaattcatgctcactttgcaaag
ttacgtacccaggcacttgcttctctacattcaggtttacagaataatcaaggtctccct
gttacccacgttgcaaagtggcttgcaatggaggatgaggacatagaaagtctcttacag
tatcatgggttctctataaaagtatttgaagagccatatatgatgaaggaaggcccattt
ctcaatcttgataaggactatcccactaagtgttctgaacttgttcatataaaaaggtca
aaaatggtagttgaggatgtttcaccttcaactcaagttgtatcctcgcctgctaaagct
acggaagagattaagtttagtaagatacataagcatgacatgatctccaccccatatatt
gaaaaggaaagttatacccatagaattgatgaagaaatgtctgatcttgacgctatttta
tccccaaaagacagccgacaacctcagccaatagtcattaaaccaacagtcagtaaacaa
ggtgaaaatgaccgtcaggcagctgatgcctctatttcaccttggggtttcttattatcc
cacagttcccccagacccgagctcactaaagttgggactgtggggaaaccaaattctgat
gcccttttcagaagctctaatgagagaaacatgcattgtgacattgggggaatgccacta
caaatggtgtcaacaacagttctgcaagagagagcttcaggtggtaaatatgattatgca
gtggaaaattctgggtctccaagtgtggtttttaataacttagaagatgcagaagcaaca
gatattcatacagatattcatgaagaaaatgaaatttgcaaagttgtgaccgatgattat
gatgaagaaactgctgaggcgaaactcaaattgatcttaaggttatggaaacggcgttct
attaagcgaagggaggttcgtgaacaaaggcagttagcagcaaatgctgcgttagacttg
ttatcattggggccacctattcgacaaagcaaagatcaaccgagcaatattggagagttt
gacattgatcatgttatgtgggaaagatataaaaggcatgtagaatcatggtcaagactt
aatgtttcagatgttatagctggtatacttagcagaagaaatccagacgccaaatgcctg
tgctggaaagttattgtatgttctctgataaacaactctggaggagttaaattggagcag
aggaaccaagttgcttgtttgccagcaggctcatggttgctttcaaagctcatgcctttc
agcaaaggtgatgatgatgatctagtaatttcatctcctggcctgtcaatatggagaaaa
tgggctagccagtatgatgctgatccgacctgctgtttgtctattgttaaggatacagat
tttgataatctagatgagacggtggctggtgcaagtgcagttttgttccttgtatcagat
aacatcccatggaatcatcaaaaagtccagctccagaaacttctaatgtcaataccttct
ggttcttgcttgccccttctgatcttaagtggctcatgcaaggaagagactcctgattca
ttctctattatggtcaatgaattgggccttcatgagattgacaagtcacagattagtagc
tttcaggtctttccccttgttgtaaaccatgagatggaacactcagacgggttttttagt
gatgagcaattaagggagggactaaagtggctggcaagcgaatcacccctgcaacctgtc
cttcataacatgaaaacacgtgaattggttcttcctcacttgaattcttcattagaggtg
cttgagaggattaatgattttgaagtaagtccgaataactgtatctctgctttcaataaa
gccttggattggtctttggaagaaattgcttctgctgccaaagcaaatcctgccaactgg
ccttgtcctgagattgctttgctggaggagtctagtgatgagcatagagtggtgaagtgg
tacttgccaactataggatggaattcactgaagaaaattgaaccgctcatgtgtgcacta
agggactgtaaacttccagcttttactgatgatatatcctggttggccagaggttcccat
atgggcaaagagattaagaaccagagactacaactcgaaaattgcttggtcacgtacctg
acgtcaagtaagatgatgcgatatactgaggcaatgaaagaggcatccctaatgctacaa
aaaagtgctcaccttgagctccataactcatgttactgtattgttccaaagtgggttatg
attttccgccgaatttttaattggcggttaatgaatttatccagtgggtccttctctgtg
gcatatgttctggagtgtcatcatgtagctcctccaattacaggagatgttgatatgtta
gggcttgaagacagtgtaccttctcattatttaaatcatccatctctagatgaaataatt
gaaggttgttgtagcctccctcctttattgggtggggatgagtcacagccagaagctttt
cagcctctttcaaggatggtcccaaatggtgaagttcatgaggctactactaacacaaat
gacttagtggaggatgaaagagatgttgtacaggatggtaatttggacatcacgtacgag
atgtcttacacgaatgtattcgacagtacttttactgaaatagtggtggctggcaaagcc
acccaggaagctgaaaacttaagcaagttattggagcagtgtaatatagagcagaacaag
ctagatgagacgctgtctatctatttttga
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