Quercus lobata (valley oak): 115994751
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Entry
115994751 CDS
T07350
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03040
Spliceosome
qlo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115994751
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115994751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
qlo03041
]
115994751
04121 Ubiquitin system [BR:
qlo04121
]
115994751
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115994751
Enzymes [BR:
qlo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115994751
Spliceosome [BR:
qlo03041
]
Complex B
Other components
Prp19 complex
115994751
Complex C
Prp19-CDC5 complex
115994751
Ubiquitin system [BR:
qlo04121
]
Ubiquitin ligases (E3)
U-box type E3
115994751
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
115994751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_WDR41
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_HPS5
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_Aladin
U-box
Beta-prop_EIPR1
Beta-prop_DCAF4
PEP5_VPS11_N
zf-Nse
Beta-prop_DCAF12
Tricorn_2nd
WD40_like
PAS_11
Beta-prop_ACSF4
V_ATPase_I_N
PUMA_CC
WDR54
KNTC1_N
Motif
Other DBs
NCBI-GeneID:
115994751
NCBI-ProteinID:
XP_030974850
UniProt:
A0A7N2LWA8
LinkDB
All DBs
Position
6:20918885..20931878
Genome browser
AA seq
522 aa
AA seq
DB search
MNCSISGEVPEEPVVSTKSGLLYEKRLIERHISDYGKCPVTGEPLTMDDIVPIKTGKIVK
PRPLQAASIPGMLGMFQNEWDSLMLANFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQADRQIPMSASMAANAPALSNGKRAAEDEEFGPGGKRIRPGISASIIGEL
TDCNAALSQQRKKRQIPPTVATVDALERYTQISSHPLHKTSKPGVVSLDIHYDKDIIATG
GLDTNAVLFDRPTGQILSTLSGHSKKVTSLKFVARGDLFLTGSADKTVRVWQESDNGNYN
CRQILKDHTAEVQAITVHATNNYFVTASLDSTWCFYELSSGLCLTQVVDSTDSSGYTSAA
FHPDGLILGTGTSEAIVKIWDVKSQANVARFDGHVGAVTSISFSENGYFLATAAHDGVKL
WDLRKLRNFRTFSPYDSETPTNSVEFDNSGCYLALSGSDIRVYQVANVKSEWNCIKTFPD
LSGTGKASCVKFGPDAKYLAVGSMDRNLRIFGLPSEDGPLES
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgaactgctcaatttccggcgaagtgccggaggagccggtggtctccacgaaatccggc
ctgctttatgagaagcgtttaatcgagagacacatctccgattatggaaaatgcccagtt
acgggggaaccactaactatggatgacattgttccaatcaaaacaggcaagatagtgaag
cccaggcctctacaggctgctagcatacctggcatgctcggaatgttccagaatgaatgg
gacagtctgatgctggccaactttgcattggaacaacaactacatacagcaaggcaagag
ctcagtcatgctctataccagcatgatgccgcttgccgtgtgattgcaagacttaagaaa
gaaagagatgaagcaaggtcactacttgctcaggctgacaggcaaatacccatgtcagca
tcaatggcagcaaatgctcctgcacttagcaacggaaagagagctgctgaggatgaggag
tttggccctggtggaaagagaatacgtcctgggatatctgcaagtattatcggtgagctg
actgactgtaatgcagctctatcacaacagcgcaaaaagcgacagatacctccaacagtg
gctaccgttgatgctttggagaggtatacccagatttctagtcatccacttcacaaaaca
agcaaacctggcgttgtatctcttgatatccattatgacaaggatataattgcaactgga
gggcttgacacaaatgctgtcctattcgatcgaccaactggacagatcttgtctacactc
agtggtcattcgaaaaaggttacaagtctaaaatttgttgcacggggcgatttattcttg
actggctctgcagacaagactgtacgcgtgtggcaagagtctgataatgggaactataac
tgtaggcagatcttgaaggatcatactgctgaggtgcaagctattactgtacatgccaca
aataactacttcgtgactgcttctcttgatagcacatggtgcttttatgaactttcttct
ggactatgtctaacacaggttgtggactcaacggattctagtggatatacttctgcagca
tttcatcctgatggtttaatccttgggacaggcacttcagaagctattgttaaaatttgg
gatgtgaaaagtcaggcaaatgttgccagatttgatggacatgttggggcagtaacttct
atatcgttctctgaaaatggatacttccttgcaactgcagctcatgatggtgttaagctg
tgggatctacgcaaattgaggaacttccgaactttctctccatatgattccgaaacccca
acaaattctgtggagtttgataatagtggatgttaccttgcgctttctggctcagatata
agagtttaccaagttgcgaatgttaaatcagaatggaattgtatcaaaactttccctgat
ttgtctggcacaggtaaggcaagttgtgtaaaattcggcccggatgcaaaatatttagca
gtaggatcaatggatagaaacctccgcattttcggcctgcctagtgaggatggtccatta
gaatcataa
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