KEGG   Quercus lobata (valley oak): 115994858
Entry
115994858         CDS       T07350                                 
Name
(RefSeq) UBP1-associated protein 2B-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
qlo  Quercus lobata (valley oak)
Pathway
qlo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:qlo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115994858
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:qlo03019]
    115994858
   03041 Spliceosome [BR:qlo03041]
    115994858
Messenger RNA biogenesis [BR:qlo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     115994858
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     115994858
Spliceosome [BR:qlo03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    115994858
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_Rrp7
Other DBs
NCBI-GeneID: 115994858
NCBI-ProteinID: XP_030975019
LinkDB
Position
6:33214972..33218702
AA seq 401 aa
MAKTTKTKKRKLVKKFHKDEPQQINKKLKSKKTEKPPPPQSDSGSDSDSDSGSGSDSFTK
LLEPYTKDQLIDLISTIALKVPPLSQHIRHVADRDVSHRKIFIHGLGWDTSRQAVLSAFE
SFGDIEDCNVVTDKATGKAKGYGFVLFTTRKSALKALQNPKKKIGNRFASCQLASVGPGV
TQAQTQAQEALSRRIYVSNVPFDTDSEKLRQFFSKFGEIETGPIGFDSTTGRSRGFALFV
YKTEAGAKKVLEDPHKSFEGHRLNCSKATEPKAKKNPVQPVVQTQPPPPQPMQQQQQQLQ
LQQQQQQQQPPPPQGSVLAAVAAAQNMAMFGHHPSLNPMYGGFIANPGAAILANQAQSVL
GAYGGAGPGLQAMYPNTQMGPHMGQPNTSRAQGPSGYPSYM
NT seq 1206 nt   +upstreamnt  +downstreamnt
atggcgaagactaccaaaaccaagaaacgaaagctcgtcaagaaattccacaaagacgaa
ccacaacaaatcaacaaaaagctcaaatccaaaaagaccgaaaagccccctccaccacaa
agcgattccggctccgattccgattctgattccggttccggctcggactccttcacgaaa
ctcctcgaaccctacaccaaagaccaactcatcgatctcatatccaccatagctctcaag
gtccctcccctctctcaacacatccgccacgtggcagaccgagacgtctcgcaccgaaaa
atcttcatccacggcctcggctgggacacctcgcgccaagccgtactctccgccttcgaa
tccttcggcgatatagaggattgcaacgtcgtcacagacaaggccaccggaaaagccaaa
ggatacggcttcgttttgttcacaactcgaaaatcagcactgaaagcactccaaaaccct
aagaagaagatcggtaaccgcttcgcttcttgccagttagcctccgtgggcccgggggtc
actcaggcccaaacccaggcccaagaagcattgtcgcgtcggatttatgtgagcaatgta
ccgttcgataccgattccgagaaattgaggcagttcttctccaaattcggcgagatcgag
accggaccgatcggattcgactccaccaccgggagatccagaggattcgctctcttcgtg
tacaaaaccgaggccggtgcgaagaaagttctagaggatccgcacaagtcattcgaagga
cacagattgaattgctcgaaagcaacggaaccgaaggccaagaaaaatccggtacagccg
gtggtgcagactcagcctcctccgccgcaaccgatgcagcaacaacaacaacaactacaa
ctacagcaacagcaacaacaacaacaaccgccaccaccgcagggttcggttttagcggcg
gttgctgcggcgcaaaatatggcgatgtttggacatcatccgagtttgaatccaatgtat
ggcgggttcattgcgaatcctggagctgcaattttggccaaccaggcccagtcggtgctc
ggggcttatggcggagcaggtccgggtttacaggcgatgtacccgaatacacagatgggc
ccacatatggggcagccgaataccagtagagcccagggtcctagtgggtacccatcatat
atgtga

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