Qipengyuania profunda: SD421_10420
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Entry
SD421_10420 CDS
T10896
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
qpr Qipengyuania profunda
Pathway
qpr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qpr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD421_10420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qpr03019
]
SD421_10420
Messenger RNA biogenesis [BR:
qpr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SD421_10420
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
RNase_J_C
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
WPL55886
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Position
1964681..1966330
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AA seq
549 aa
AA seq
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MKKDFTPEDELLFLALGGSGEIGMNVNLYGCQGRWLMVDLGMTFSGDQYPGVDLVFADLE
FIEERSKQLDAIVLTHAHEDHIGAVPYFAADLGVPIYATPFTADLVRRKLSEAGLVDEVE
LHVIPDDHGSFEVGPFEITYLPLAHSIAEGNALLIDTPHGRIFHTGDWKLDEDPIIGEPT
TEAELTEIGDEGVLALVCDSTNVFNPAPSGSEGAVHKGLLEEVQRHAGKRVLVTTFASNV
ARLQTLGDVARETGRQVCVAGRSLDRIIEVAQDNGYLEDFPEPVDFDTAMGLPRGEILIL
ATGGQGEPRAALARVADENHPIELVSGDVVLFSSRQIPGNELSIGIVQNKLAARGITMVT
DRQSMIHVSGHPGRPELEALYGWLRPEILVPVHGEMRHMQEQGRVGKASGIPEQVVQQNG
DLVRLAPGAPGKIAEVKAGRLVLDGDIIVPANGEAIAMRRRIMREGVVIVALDGDLNPRI
DSLGLPLDEDYESFVAEAVSDIRTAIGKLRGADRRNEGSVHEAARLAARRAAQRWSGKRP
QVRVIVPNL
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
gtgaagaaggatttcactcccgaagacgaactgctgttcctcgcgcttggcggctcgggc
gaaatcggcatgaacgtcaacctctacggttgccagggccggtggctgatggtcgatctg
ggcatgaccttttcgggggatcagtacccgggtgtcgacctggtcttcgccgatctggaa
tttatcgaagaacgcagcaagcaactcgacgcgatcgtgctgacccatgcgcatgaggat
catatcggcgctgtgccctatttcgcggccgatctgggcgtgccgatctatgccacgccg
ttcactgccgaccttgttcgccgcaaattgtccgaagcgggactggtcgacgaggtcgaa
ctgcatgtaattccggacgaccacggcagtttcgaagtcggcccgttcgagatcacctat
ctcccgctcgcgcattcgatcgccgagggcaatgcgctgctgatcgatacgccccacggg
cgcattttccacaccggcgattggaagctcgacgaagacccgatcatcggcgagccgacg
accgaggcagagctgaccgagatcggcgacgagggcgtgctcgcgctggtctgcgacagc
accaatgtcttcaaccccgcgcccagcggatccgaaggcgcggtccacaaggggctgctc
gaagaagtccagcggcatgcgggcaagcgcgtgctggtgacgaccttcgccagcaatgtc
gcgcggctgcagacgctgggcgatgtcgcacgcgaaaccgggcgtcaggtatgcgttgcg
gggcgttcgctcgaccgcatcatcgaggtggcgcaggacaatggctatctcgaggatttc
cctgagccggtcgatttcgataccgccatgggactgccgcgcggcgagatactcatcctc
gctaccggcgggcagggcgagccccgcgccgcgctggcgcgggtggcggatgaaaaccac
ccgatcgaactggtcagcggcgatgtcgtgctgttttcgagccggcagatcccgggcaat
gaactgtccatcgggatcgtgcagaacaagctcgcggcgcgtggtatcaccatggtcacc
gaccggcagagcatgatccacgtatcgggccatcccgggcgccccgaactcgaagcgctc
tatggctggctacggcccgaaatcctcgtccccgttcatggcgagatgcggcacatgcag
gaacagggccgcgtcgggaaggccagcggcatccccgaacaggtcgtgcaacagaatggc
gaccttgtccgcctcgcgcccggcgcacccggcaagattgccgaggtcaaggcggggcgg
ctcgtcctcgacggcgacatcatcgtacctgccaatggcgaggcgattgccatgcgccgc
cggatcatgcgcgaaggcgtggtgatcgtggcgctcgacggcgatctcaacccccgcatc
gacagtctcggactgccgctcgacgaggattacgagagcttcgtcgccgaggcggtcagc
gatatccgcacggccatcggcaagctgcgcggcgccgaccggcgcaatgaaggcagcgtg
cacgaagcggcgcgtctggctgcacggcgcgcggcacagcgctggtcgggcaagcgcccg
caggtccgcgtgatcgtgcccaacctgtag
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