KEGG   Qipengyuania profunda: SD421_10420
Entry
SD421_10420       CDS       T10896                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
qpr  Qipengyuania profunda
Pathway
qpr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:qpr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SD421_10420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:qpr03019]
    SD421_10420
Messenger RNA biogenesis [BR:qpr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SD421_10420
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B_2 Lactamase_B RMMBL Anti-Pycsar_Apyc1 RNase_J_C Lactamase_B_6
Other DBs
NCBI-ProteinID: WPL55886
LinkDB
Position
1964681..1966330
AA seq 549 aa
MKKDFTPEDELLFLALGGSGEIGMNVNLYGCQGRWLMVDLGMTFSGDQYPGVDLVFADLE
FIEERSKQLDAIVLTHAHEDHIGAVPYFAADLGVPIYATPFTADLVRRKLSEAGLVDEVE
LHVIPDDHGSFEVGPFEITYLPLAHSIAEGNALLIDTPHGRIFHTGDWKLDEDPIIGEPT
TEAELTEIGDEGVLALVCDSTNVFNPAPSGSEGAVHKGLLEEVQRHAGKRVLVTTFASNV
ARLQTLGDVARETGRQVCVAGRSLDRIIEVAQDNGYLEDFPEPVDFDTAMGLPRGEILIL
ATGGQGEPRAALARVADENHPIELVSGDVVLFSSRQIPGNELSIGIVQNKLAARGITMVT
DRQSMIHVSGHPGRPELEALYGWLRPEILVPVHGEMRHMQEQGRVGKASGIPEQVVQQNG
DLVRLAPGAPGKIAEVKAGRLVLDGDIIVPANGEAIAMRRRIMREGVVIVALDGDLNPRI
DSLGLPLDEDYESFVAEAVSDIRTAIGKLRGADRRNEGSVHEAARLAARRAAQRWSGKRP
QVRVIVPNL
NT seq 1650 nt   +upstreamnt  +downstreamnt
gtgaagaaggatttcactcccgaagacgaactgctgttcctcgcgcttggcggctcgggc
gaaatcggcatgaacgtcaacctctacggttgccagggccggtggctgatggtcgatctg
ggcatgaccttttcgggggatcagtacccgggtgtcgacctggtcttcgccgatctggaa
tttatcgaagaacgcagcaagcaactcgacgcgatcgtgctgacccatgcgcatgaggat
catatcggcgctgtgccctatttcgcggccgatctgggcgtgccgatctatgccacgccg
ttcactgccgaccttgttcgccgcaaattgtccgaagcgggactggtcgacgaggtcgaa
ctgcatgtaattccggacgaccacggcagtttcgaagtcggcccgttcgagatcacctat
ctcccgctcgcgcattcgatcgccgagggcaatgcgctgctgatcgatacgccccacggg
cgcattttccacaccggcgattggaagctcgacgaagacccgatcatcggcgagccgacg
accgaggcagagctgaccgagatcggcgacgagggcgtgctcgcgctggtctgcgacagc
accaatgtcttcaaccccgcgcccagcggatccgaaggcgcggtccacaaggggctgctc
gaagaagtccagcggcatgcgggcaagcgcgtgctggtgacgaccttcgccagcaatgtc
gcgcggctgcagacgctgggcgatgtcgcacgcgaaaccgggcgtcaggtatgcgttgcg
gggcgttcgctcgaccgcatcatcgaggtggcgcaggacaatggctatctcgaggatttc
cctgagccggtcgatttcgataccgccatgggactgccgcgcggcgagatactcatcctc
gctaccggcgggcagggcgagccccgcgccgcgctggcgcgggtggcggatgaaaaccac
ccgatcgaactggtcagcggcgatgtcgtgctgttttcgagccggcagatcccgggcaat
gaactgtccatcgggatcgtgcagaacaagctcgcggcgcgtggtatcaccatggtcacc
gaccggcagagcatgatccacgtatcgggccatcccgggcgccccgaactcgaagcgctc
tatggctggctacggcccgaaatcctcgtccccgttcatggcgagatgcggcacatgcag
gaacagggccgcgtcgggaaggccagcggcatccccgaacaggtcgtgcaacagaatggc
gaccttgtccgcctcgcgcccggcgcacccggcaagattgccgaggtcaaggcggggcgg
ctcgtcctcgacggcgacatcatcgtacctgccaatggcgaggcgattgccatgcgccgc
cggatcatgcgcgaaggcgtggtgatcgtggcgctcgacggcgatctcaacccccgcatc
gacagtctcggactgccgctcgacgaggattacgagagcttcgtcgccgaggcggtcagc
gatatccgcacggccatcggcaagctgcgcggcgccgaccggcgcaatgaaggcagcgtg
cacgaagcggcgcgtctggctgcacggcgcgcggcacagcgctggtcgggcaagcgcccg
caggtccgcgtgatcgtgcccaacctgtag

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