Qipengyuania profunda: SD421_11275
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Entry
SD421_11275 CDS
T10896
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
qpr Qipengyuania profunda
Pathway
qpr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
qpr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SD421_11275 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qpr03021
]
SD421_11275 (rpoD)
Transcription machinery [BR:
qpr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SD421_11275 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Disulph_isomer
ExsD_M
DUF4168
Motif
Other DBs
NCBI-ProteinID:
WPL56049
LinkDB
All DBs
Position
2138844..2140862
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AA seq
672 aa
AA seq
DB search
MATKSKTTDDGDAPLIDLNEASIKKLIAKAKRKGYVTYDELNDALPQGEMSSDQIEDIQS
ALSDMGVQIVESDEEAEAAAEEDSEVEEIAAGAKKDTKAAANKPTATRKLATGERTDDPV
RMYLREMGAVELLSREGEIAIAKRIEAGRDMMIMGLCQSPITFHAIIQWSEALNAEEMQL
REILDLDAMLSKEPPPEKMEAGEDEDDDGEISEETAGPTIRDDDEDEDSEEEGEEGEEGS
SKSDDEEEEDNTMSLAQMEAALKPDAIERFARIADLFGKFEKLQKERVDLMAKGEVFTRA
KEKKYEALSEQLTAEVESVQFHATKIEFLVDNLYAFNRRLTALGGQMLRLAERHKVKRID
FLDAYIGNELDDSWLKERAKKDKKWAAFAEKEGDAVERIRAEISDIASQTGMALEEFRRI
VNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRCSRQFLHDQGREPTPE
EMAEKLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLK
ETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHP
SRSRKMRSFLDQ
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaagtcgaagaccacggacgatggcgacgctcccctgatcgacctcaacgaa
gcctcgatcaagaagctgatcgccaaggcgaagcgcaagggttacgtcacctacgacgag
ctcaacgacgcgctgccgcagggcgagatgagttcggaccagatcgaagatatccagtcc
gccctgtccgacatgggtgtgcagatcgtcgaaagcgacgaggaagccgaagccgcggcc
gaggaagattccgaagtcgaggaaatcgcagcgggtgccaagaaagacaccaaggccgca
gccaacaagcccaccgccacgcgcaagctcgccaccggcgaacgcaccgatgacccggtc
cgcatgtacctgcgcgaaatgggcgcggtcgaactgctcagccgcgaaggcgaaatcgcg
atcgccaagcgcatcgaagccggccgcgacatgatgatcatgggcctgtgccagagcccg
atcaccttccacgccatcatccagtggtccgaagcgctcaacgccgaggaaatgcagctg
cgcgagatcctcgatctcgatgccatgctgtcgaaggaacccccgcccgagaagatggaa
gcgggcgaggatgaagacgacgacggcgagatttccgaggaaaccgccggtccgacgatt
cgcgacgacgatgaagacgaggattcggaagaagaaggcgaagagggcgaggaaggttcg
tccaagagcgacgacgaagaggaagaggacaacaccatgtcccttgctcagatggaagcc
gcgctcaagccggatgccatcgaacggttcgcgcgcatcgccgacctcttcggcaaattc
gagaagctccagaaggagcgcgtcgacctgatggccaagggcgaggttttcacccgcgcc
aaggaaaagaaatacgaagcgctttcggaacagctcaccgccgaagtcgaaagcgtccag
ttccacgcgaccaagatcgaattcctggtcgacaatctctacgccttcaaccgccgcctg
accgcgctgggcggccagatgctgcgccttgccgaacgccacaaggtcaagcggatcgat
ttcctcgatgcctatatcggcaacgagctcgacgatagctggctcaaggaacgcgccaag
aaggacaagaagtgggcggccttcgccgagaaggaaggcgatgcggtcgaacgcatccgt
gccgagatctcggacatcgccagccagaccggcatggcgctggaagagttccgccgtatc
gtgaacatggtccagaagggcgagcgcgaggcgcgtatcgccaagaaggaaatggtcgag
gcgaatttgcgcctcgtgatctcgatcgccaagaaatacaccaaccgcggcctgcagttc
ctggatctcatccaggaaggcaacatcggcctgatgaaggcggtcgacaaattcgaatac
cgccgcggttacaagttcagcacctatgccacctggtggatccgtcaggcaattacccgc
tcgatcgccgatcaggcacgcacgatccgcatcccggtccacatgatcgagacgatcaat
aagctggtgcgctgcagccgccagttcctgcacgaccagggccgcgaaccgacacccgaa
gagatggccgagaagctctcgatgccgctcgagaaggtgcgcaaggtgatgaagatcgcc
aaggaaccgatcagcctcgaaacgccgatcggcgacgaggaagattcgcatctgggcgat
ttcatcgaggacaagaacgcgatcatccccgtcgatgccgcgatccaggccaacctcaag
gaaaccgtgacccgggttctggccagcctcaccccgcgcgaagaacgcgtactgcgcatg
cgcttcggtatcggcatgaacaccgatcacacgcttgaggaagtcggccagcagttctcg
gtcacccgtgaacgtatccgccagatcgaggccaaggctttgcgcaagctcaagcacccg
agccgtagccgcaagatgcgttcgttcctcgatcagtag
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integrated database retrieval system
