Qipengyuania profunda: SD421_11910
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Entry
SD421_11910 CDS
T10896
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
qpr Qipengyuania profunda
Pathway
qpr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
qpr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SD421_11910 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qpr03400
]
SD421_11910 (mfd)
Enzymes [BR:
qpr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SD421_11910 (mfd)
DNA repair and recombination proteins [BR:
qpr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SD421_11910 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
UB2H
SecA_DEAD
MFD_D3
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WPL56161
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All DBs
Position
2268282..2271788
Genome browser
AA seq
1168 aa
AA seq
DB search
MSDLSNILNAREPLTLAQVARGAQPLVLADLARASTGRAVFIAPDDAAMRGIVEAAAFFA
PELDVIEFPAWDSLPYDRASPALSISARRLAALHRLQTGKAKAQLIVTTANAVLQRVLTP
FRIRESVREFKVGTEIGRESLAALLQRQGYSRADTVIDKGEYAVRGSIVDIFPSGMEEAL
RLDFFGDELESLRTFDPNTQMSTGRLQSHLLLPASEALLDDDSIKRFRSRYREMFGANAT
QDPLYEAISEGRRLAGMEHWLPLFEDKLATLFDHLGKDDLIVIDQAALAAADERVKDIGD
YYDQRTAITGQAKGNYRPLKPDALYLTAGEFKAGLAAAPAHRATPFDEPESAKVVNFGFR
SGRDFAPERARGDNVYPVLADHLKALAKAGKRPLLAAYSKGSRARIASILEEAGTPVQMA
DTWQEALGLSAAKGSGVPRPTAMILPIEASFANDELELLTEQDILGDRLVRRKKKRKDAD
AFLAELQALSVGDLIVHTEHGIGKYLGLEPIAVGKSKHDCVQLEYKGGDKLFIPVENIDV
LSRYGSSEEAVQLDRLGGEAWQKRRARLKERILEIAGELMQVAAQRALKKAPVLEVEDGP
YNQFLDRFPWEETDDQERAIEDVLGDLESGKPMDRLVCGDVGFGKTEVALRAAFVAAMNG
QQVAVVAPTTLLARQHFENFAARFNGFPLKVGRLSRLVPAREVKETRAGLADGQVDIVVG
THAILSKQTNFKNLGLVIVDEEQRFGVTHKEKLKQLRADVHMLTLTATPIPRTLQMAMTG
LRELSTIQTPPVDRLAVRTYVMEWDDMVMREALLREHHRGGQSFIVVPRISDMEAISDWL
HEHVPEVKFVAAHGQMGAGEIEERMSAFYEGKYEVLLATTIVESGLDLPSANTIIIHRAD
IFGLAQLYQLRGRVGRSKLRAYAYLTYATDTQLSEVAEKRLKVLGDLDSLGAGFQLASHD
LDIRGAGNLLGDEQSGHIREVGFELYQSMLEDAILAAKAGELGLEAKPERVSPQITVDAP
IMIPENYVPDLAVRMALYRRLNDAQDKPEIDALAAEMIDRFGDLPAATANLVKLIEIKHQ
AIEANIAKIDVGAQGTLVTFHQDDFPDPVGLLAYVDRLKGTAKLRPDMKLVISRAWGSPE
SRLNGLIQLTKGLSGIVRKSRKRENAGA
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatctttccaatatcctgaacgcccgcgaaccgctcacgctggcgcaggtggca
cggggcgcgcagccgctggtcctggccgatctggcccgcgccagcacggggcgcgcggtg
ttcatcgcacccgacgatgcagcgatgcgcgggatcgtcgaggcggcggcgttcttcgcc
cccgaactcgacgtgatcgaatttcccgcgtgggattcgctgccctacgaccgcgccagc
ccggcgctgtcgatcagcgcacgccggctggccgcgcttcaccggctgcagacgggcaag
gccaaggcgcagctgatcgttaccaccgccaacgccgttctccagcgcgtgctcaccccg
ttccgcatccgcgaaagcgtgcgcgagttcaaggtggggaccgagatcgggcgcgagagc
ctcgccgcgttgctccagcggcagggctacagccgtgcggacacggtgatcgacaagggc
gaatatgccgtccgcggttcgatcgtcgacattttcccgagcggtatggaagaggcgctg
cggctcgacttcttcggcgacgaattggagagcctgcgcaccttcgatcccaatacgcag
atgagcaccgggcggctccagtcgcacctgttgctgcccgccagcgaagcgctgctcgac
gatgacagcatcaagcggttccgcagccgctaccgcgagatgttcggcgccaatgccacg
caggacccgctttacgaagccatcagcgaggggcgtaggctggcggggatggagcactgg
ctgcccttgttcgaggacaagctggccacgctgttcgaccatctcggcaaggacgacctc
atcgtgatcgaccaggcggcgctggccgctgcggacgagcgcgtgaaggatatcggcgat
tattacgaccagcgcaccgccatcactggacaggccaagggcaattaccggcccctgaag
cccgatgcgctctatctcactgcgggcgaattcaaggccggccttgctgccgcccccgcc
caccgcgcgacgcctttcgatgaacccgaaagcgccaaggtggtgaatttcggcttccgc
tcgggccgcgacttcgcgcccgaacgtgcccgcggggacaatgtctatcccgtgctggcc
gaccacctcaaagcgctggcgaaagcgggcaagcgtccgctgctcgccgcctattccaag
ggtagccgcgcgcgcatcgcctcgatcctggaggaagcaggtacgccggtacagatggcc
gacacctggcaggaagcgctgggcctctcggctgcgaagggatcgggcgtacccaggccc
acggcgatgatcctgcccatcgaagccagcttcgccaatgacgagctcgaactgctgacc
gagcaggacatccttggcgaccggctggtgcggcgcaagaagaagcgcaaggatgccgac
gccttcctcgccgaattgcaggcgctcagcgtaggcgatctgatcgtccacaccgaacac
ggaatcggcaaatatctcggtctcgaaccgatcgcggtgggcaagtccaagcacgattgc
gtccagctcgaatacaagggcggcgacaagctgttcatcccggtcgagaatatcgacgtc
ctcagccgctatggctcgtccgaagaggcggtgcagctcgaccggctcggcggcgaagca
tggcagaaacgccgcgcgcggctgaaggagcggatcctcgagattgccggcgaactgatg
caggtcgccgctcagcgtgcactgaagaaagcccccgtgctggaggtggaggacggcccc
tacaaccagttcctcgaccgcttcccgtgggaagaaaccgacgaccaggaacgcgcgatc
gaggatgtccttggcgacctcgaaagtggcaagccgatggaccggctggtctgcggcgat
gtcgggttcggcaagaccgaggtcgcactgcgcgccgccttcgtcgcggcaatgaacggc
cagcaggtcgcggtggtcgcgccgaccaccctgctcgcgcgccagcatttcgagaatttc
gctgcgcgcttcaacggcttcccgctcaaggtcggccgcctgtcgcggctcgtcccggcg
cgcgaggtgaaggaaacgcgcgcggggctggccgatgggcaggtcgatatcgtcgtcggc
acgcatgcgatcctgtcgaagcagaccaacttcaagaacctcggactggtcatcgtcgac
gaggaacagcgcttcggcgtcacgcataaggaaaagctcaagcaattgcgcgccgacgtg
catatgctcacgctcaccgccacgccgatcccgcgtacgctgcaaatggcgatgaccggg
ctgcgagagctgtcgaccatccagaccccgccggtcgaccgcctcgcggtgcgtacctat
gtgatggagtgggacgacatggtgatgcgcgaagccctgctgcgcgaacatcaccgcggc
gggcaaagcttcatcgtcgtgccccggatttccgacatggaagccatttccgactggctc
cacgagcacgtgcccgaggtcaaattcgtcgccgcgcatggccagatgggtgcaggcgag
atcgaggagcggatgagcgccttctacgagggcaaatacgaagtgctgctggcgactacc
attgtcgaaagtgggctcgacttgcccagcgcgaacacgatcatcatccaccgcgccgat
attttcggcctcgcccagctctaccagctgcgcggacgcgtgggccgttcgaagctgcgc
gcctatgcctatctcacctacgccaccgacacgcaattgtccgaagtggcggaaaagcgc
ctcaaggtgctgggcgatctcgacagtctcggcgcaggcttccagcttgccagtcacgat
ctcgacattcgcggtgcgggcaatctgcttggcgacgaacaatcgggccacatccgcgag
gtcgggttcgaactctaccaatcgatgctggaggatgcgatccttgcagccaaggcgggc
gaactggggctggaagccaagcccgaacgcgtcagcccgcagatcaccgtcgatgcgccg
attatgatccccgagaactacgtccccgacctcgcggtgcgcatggctctttaccgccgc
ctcaacgatgcgcaggacaagcccgagatcgatgcgctggccgccgagatgatcgaccgc
ttcggcgatctacccgctgccaccgccaatctcgtcaagctgatcgagatcaagcaccag
gcgatcgaggccaatatcgccaagatcgatgtcggggcgcagggtacgctggtgaccttc
caccaggacgatttccccgatccggtggggctgctcgcctatgtcgaccggctgaagggc
accgccaagctgcgccccgacatgaagctggtcatcagccgcgcatggggttcgcccgaa
agccgcctcaacggcttgatccagctgaccaaggggctgtcgggtatcgtcaggaaatcg
cgcaagcgcgagaacgcgggggcctag
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