Qipengyuania psychrotolerans: K3166_05880
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Entry
K3166_05880 CDS
T09867
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
qps
Qipengyuania psychrotolerans
Pathway
qps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K3166_05880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qps03019
]
K3166_05880
Messenger RNA biogenesis [BR:
qps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K3166_05880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
RNase_J_C
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
QZD88198
UniProt:
A0ABX8ZKI1
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Position
1197131..1198786
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AA seq
551 aa
AA seq
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MKKNFAPEDELLFLALGGSGEIGMNVNLYGCQGRWLMVDLGMTFSGGEYPGVDLVFADLE
FIEERLDQLEAIVLTHAHEDHIGAVPYFAADLGVPIYATPFTMDLVRRKLEEAGVLGEVE
LHTIPDDHGSFEVGPFEVTYIPLAHSIAEGNALLIDTPHGRIFHTGDWKLDEDPIIGEPA
TEEELTELGDKGILALVCDSTNVFNPAPSGSEGAVYKGLLEEAQRHSGKRILVTTFASNV
ARLHTLGEVAKETGRQLCVAGRSLDRIIEVAQANGYLDDFPDPVDFDTAMGLPRGEVLIL
ATGGQGEPRAALSRISEDNHPLQLVSGDVVLFSTRQIPGNELSIGAVQNRLAAKGITMVT
DRQSMIHVSGHPGRPELEALYGWIRPDVLVPVHGEMRHMQEQGRLGKANGIADAVVQQNG
DIVRLAPGAPGTIAQVRAGRLVLDGDIIAPAGGDAIVMRRRIMQEGVMIVALDSRLDPQI
DSLGLPLDEDYDDFIAETKEDVVNAIAKLKGKDRSTASSVHEAARLAARRAAQRWSGKRP
QVRVILPASMG
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaagaatttcgcacccgaagacgaacttctgttcctggccctcggcgggtccggc
gagatcggaatgaacgtcaacctttacgggtgccagggccgatggctgatggttgacctc
gggatgacgttttccggcggagaatatcccggcgtcgaccttgtatttgcagatctggaa
ttcatcgaagaacggctcgaccaacttgaggccatcgtgctgacccatgcgcatgaggac
catattggcgccgtgccatatttcgcggctgacctgggcgtcccgatctatgccacgccg
ttcacgatggacctcgtgcgtcgtaagctggaagaagcaggcgttctgggggaagtcgaa
ctgcacacgatcccggacgatcacggtagcttcgaagtagggcccttcgaggtgacctat
atcccgcttgctcactcaatcgccgagggcaacgcgttgctgatcgacacaccgcatggc
aggatttttcatactggggactggaaactcgacgaagatccgatcatcggcgaacccgcc
acggaagaagagcttaccgagctgggcgacaaaggcattcttgcactggtttgtgacagc
accaacgttttcaatcccgcgccaagcggctccgaaggggccgtttataaagggctcctg
gaagaggcgcagcggcattcgggcaaacgcatcctggtcacgactttcgccagcaatgtc
gcccggctccacaccttgggcgaagtggccaaggaaaccgggcgccaactttgtgttgca
ggtcgttcgcttgaccgcatcatcgaagttgcgcaggccaacggctatctggatgacttc
ccggatcctgttgatttcgacactgccatgggcctgccacgcggcgaggtcttgatcctt
gcaaccggggggcagggcgagccgcgcgctgctctttccaggatttctgaagacaaccat
ccacttcaactcgtttcaggcgacgtggttcttttctcgacgcgccagattcccggcaac
gaactttcgattggggccgtacagaaccgactggcggccaagggcatcacgatggtcacc
gaccgtcagagtatgatccacgtatctggccacccgggccgtcctgaactggaggcgctc
tatggctggatcagaccggatgtgctggtcccggtccatggcgaaatgcgtcacatgcaa
gaacaaggacggcttggaaaagcgaatggcattgcagatgctgtcgtccagcagaacggt
gacatcgtaaggctcgctcctggagcacccggcaccatcgcacaggtcagggcggggcgg
ctcgtgctcgacggtgatattattgcgccagcgggcggtgatgccatcgtgatgcgtcgg
cgcatcatgcaggagggcgtcatgatagttgcgctggacagccgtctcgacccgcagatc
gatagcctgggccttccgcttgacgaagactatgatgatttcattgcggaaaccaaagaa
gacgtcgtcaacgcaatcgcgaaactgaagggcaaggatcgcagcaccgcttcgtcggtc
cacgaagcggcacgccttgctgcgcgccgtgcggcacagcgctggtccggaaagcgtccg
caggtccgcgtgatcttgccggcgagcatggggtag
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