KEGG   Quillaja saponaria (soapbark tree): O6P43_000234
Entry
O6P43_000234      CDS       T09778                                 
Name
(GenBank) THO complex subunit 4A
  KO
K12881  THO complex subunit 4
Organism
qsa  Quillaja saponaria (soapbark tree)
Pathway
qsa03013  Nucleocytoplasmic transport
qsa03015  mRNA surveillance pathway
qsa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:qsa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    O6P43_000234
  09122 Translation
   03013 Nucleocytoplasmic transport
    O6P43_000234
   03015 mRNA surveillance pathway
    O6P43_000234
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:qsa03019]
    O6P43_000234
   03041 Spliceosome [BR:qsa03041]
    O6P43_000234
Messenger RNA biogenesis [BR:qsa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     O6P43_000234
    TREX complex
     O6P43_000234
Spliceosome [BR:qsa03041]
 Complex C
  Other components
   EJC/TREX
    O6P43_000234
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    O6P43_000234
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3
Other DBs
NCBI-ProteinID: KAJ7980889
UniProt: A0AAD7VMI2
LinkDB
Position
1
AA seq 250 aa
MSAALDRTLDDIIKSNKKSGSGNSRGRGRGSGSGPGPARRFSNRAANRAANRAAPYTAAK
APETAWKQDMFMDQPAVAFQAQAGRASSIETGTKLYISNLDYGVSNEDIKELFSEVGDLK
RYAIHYDRSGRSKGTAEIVFSRRTDAAAAVKRYNNVQLDGKPMKIEIVGTNIAMPAVAPT
ANGAFGNSNGIPRGGQGRGVARGRSRAGGAPRGRGFGGGRGRGRGRGEKVSAEDLDAELE
KYHAESMQIN
NT seq 753 nt   +upstreamnt  +downstreamnt
atgtctgctgctttggataggacccttgacgatatcatcaagagcaacaaaaagtccgga
tccggtaattcccggggccgtggccgtggatctggttccggacctggccctgctcgccgc
ttctctaaccgtgctgctaatcgtgctgctaatcgtgcggcaccttatactgccgctaag
gcgccggagacagcatggaagcaggatatgttcatggatcagccagcggtagcgtttcaa
gcacaagctgggcgagcgtcttctatagaaaccgggacaaagctctacatatctaatttg
gattacggtgtttcaaacgaggatatcaaggaattgttttctgaagttggtgacctgaaa
agatatgcaattcattatgacaggagtgggagatcgaagggaacggcagaaatagtcttc
tctcggcgaacagatgcagctgctgctgtaaagagatacaataatgttcaacttgatggg
aaaccaatgaagatagagattgtgggaactaatattgcaatgcctgctgtggctcctact
gccaatggtgcttttggaaattcaaatggaattcccagaggtggacaagggaggggtgtg
gcacgaggaaggtcacgtgctggtggtgcccctagaggtcgtggttttggagggggtcgt
ggacggggaagaggccgtggtgagaaggtatctgccgaagatcttgatgctgaattagag
aagtatcatgcagaatcaatgcagattaactaa

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