Quillaja saponaria (soapbark tree): O6P43_001207
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Entry
O6P43_001207 CDS
T09778
Name
(GenBank) Nuclear fragile X mental retardation-interacting protein 1, conserved domain protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
qsa
Quillaja saponaria (soapbark tree)
Pathway
qsa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
qsa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
O6P43_001207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
qsa03021
]
O6P43_001207
03019 Messenger RNA biogenesis [BR:
qsa03019
]
O6P43_001207
Transcription machinery [BR:
qsa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
O6P43_001207
Messenger RNA biogenesis [BR:
qsa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
O6P43_001207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
DUF3490
Motif
Other DBs
NCBI-ProteinID:
KAJ7982033
UniProt:
A0AAD7QII5
LinkDB
All DBs
Position
1
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AA seq
638 aa
AA seq
DB search
MSNRSSMTQSGFVNASNQLLPSQNSNLGMPHLGSVGSTNMIQTSMQTQPQPGPNNHQNSM
PYMPNMQPSIPQAAFMNAANNFLGLQMQSSLLGLPHMSSVGPTTQLSQFNMGFGPQNGAN
YMNCIPTSPFHGQITQNAAQMNLPQPLGQLFLNNFLSIPQQHNLNMNIPNGQYCAPVPLQ
NMNQNAHMQVTNPSQVLPFALPHPMLGVPNQFPQGIVPQNLNFSANAQFGRVHCNQFSQQ
VNQNQKNLVLPKVDANALKSSPVASQQLQGSNYASCNYNSKPSEFTMSQCNPINNSRINI
PNSNWKGSPSKNFKSKRNREAFQGGSQKSKLQNTNNAKRNFGFPKEHKGKGLSNGRAGKL
GPVNSSNQAKELKRSSSVIYTKQEVQQWREARRKNYPSKANSEKRNKKLEDYEVDKEAKL
RREQLKEILAKQAELGVEVAEIPSSYLLDSEKQAFSKQEKRKEMSKKGGFQNKFDRRGRY
DKRNRYAKKQRLSVKDLSEGPTLNKRDPTLLQKLLSADIRRDKSCLLQVLRFMTMNSFFE
GWPDKPLQYPSVVVKDIGDEGNDKNKYIESRKNVCETMLDNDNIGNYVGKDKDEDGNEDN
DCDEDIAQDDEESYTINRECGNGKGIEEPDEEEGEIID
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatcggtcttccatgactcagtctggtttcgtgaatgcttctaaccagcttctt
ccctcgcaaaatagtaatctgggcatgcctcatttaggctctgttggttctaccaatatg
atacaaacttctatgcagactcagcctcagccgggtccaaataatcaccaaaattcaatg
ccttatatgcccaatatgcaaccatcgatacctcaagctgcattcatgaatgctgctaat
aattttctcggcttgcaaatgcaaagcagtttactgggtctgcctcatatgagttcagtt
ggtcctactactcaattgagtcagttcaacatggggtttggtcctcaaaatggtgcaaat
tatatgaactgcattccgacatcaccatttcatgggcaaatcacgcagaatgcagctcaa
atgaatttgcctcaacctttggggcagctattcttgaataattttcttagtatacctcag
caacataatctgaatatgaacataccaaatggccaatactgtgcccctgtccctttgcaa
aatatgaaccaaaatgctcacatgcaagttacaaatccttctcaagttctaccttttgca
ttaccacatcccatgcttggggttccaaatcaatttcctcagggcatagttcctcaaaat
ctcaacttttctgcaaatgcacagtttggtcgtgtgcattgtaatcaatttagccagcag
gttaaccagaatcagaaaaacttagttcttcccaaggtggatgcaaatgctttgaaatca
tcacctgttgcatctcagcagttgcagggtagcaattatgcatcatgtaattataattct
aaaccttctgaattcacaatgtcacagtgtaatcctattaataatagcagaattaatatt
ccaaactccaactggaaaggttcgccaagcaaaaacttcaaaagtaagcgaaatagagag
gcctttcaaggaggatctcaaaagtctaagcttcaaaatacgaacaatgcaaagaggaac
tttgggtttcctaaagaacacaagggaaaaggtcttagtaatgggagggctggaaagttg
ggtcctgttaattcttcaaaccaagccaaggaactgaaaagatcctcttctgttatttac
acgaaacaagaagtccaacagtggcgcgaagctcggaggaagaactacccatcaaaagcc
aactctgagaaacgtaataagaagttagaagactatgaggtagataaagaggccaaatta
agaagggagcaactcaaggagattctagcaaagcaggctgagttgggagttgaagttgca
gaaataccatcatcctatctcttagattcagaaaaacaagctttcagcaagcaagagaaa
cgaaaggagatgagtaagaaaggtggattccagaacaagtttgacagaagaggaagatat
gacaaaagaaaccggtatgccaagaagcaaagattatcagtaaaggatttatcagaaggt
cctactttgaacaagagggacccaactctactgcagaagctcttgagtgcagatataagg
agggacaaaagctgcctgttgcaggttttgaggttcatgacaatgaattcattcttcgaa
ggttggcctgataaaccattacaatatccatcggttgtagttaaagatattggagatgaa
ggtaatgataaaaataaatatattgaaagtagaaaaaatgtttgtgagacaatgcttgac
aatgacaacattggtaattatgttggtaaagataaagatgaggatggcaatgaagacaat
gactgtgatgaagatattgctcaagatgatgaagagtcttatactataaacagagagtgt
ggtaatggaaaggggattgaggaacctgatgaagaggagggggaaattatagactag
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